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Published on: September 28, 2018
Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c
Kohei Takeshita1, Tohru Tezuka, Yukari Isozaki
1Institute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan.
Abstract:
Through their ubiquitin ligase activity, Cbl-family proteins suppress signalling mediated by protein-tyrosine kinases (PTKs), but can also function as adaptor proteins to positively regulate signalling. The tyrosine kinase binding (TKB) domain of this family is critical for binding with tyrosine-phosphorylated target proteins. Here, we analysed the crystal structure of the TKB domain of Cbl-c/Cbl-3 (Cbl-c TKB), which is a distinct member of the mammalian Cbl-family. In comparison with Cbl TKB, Cbl-c TKB showed restricted structural flexibility upon phosphopeptide binding. A mutation in Cbl-c TKB augmenting this flexibility enhanced its binding to target phosphoproteins. These results suggest that proteins, post-translational modifications or mutations that alter structural flexibility of the TKB domain of Cbl-family proteins could regulate their binding to target phosphoproteins and thereby, affect PTK-mediated signalling.
Insights
The Cbl-c TKB domain
Area of Science:
- Biochemistry
- Molecular Biology
- Cell Signaling
Background:
- Cbl-family proteins regulate signaling pathways mediated by protein-tyrosine kinases (PTKs).
- The tyrosine kinase binding (TKB) domain is crucial for Cbl proteins to interact with phosphorylated targets.
- Cbl proteins can act as both suppressors and positive regulators of PTK signaling.
Purpose of the Study:
- To determine the crystal structure of the TKB domain of Cbl-c/Cbl-3 (Cbl-c TKB).
- To investigate the structural flexibility of Cbl-c TKB compared to other Cbl TKB domains.
- To understand how structural flexibility influences the binding of Cbl-c TKB to phosphoproteins.
Main Methods:
- X-ray crystallography to determine the structure of Cbl-c TKB.
- Comparative structural analysis of Cbl-c TKB and other Cbl TKB domains.
- Biochemical assays to assess the binding affinity of wild-type and mutant Cbl-c TKB to phosphopeptides.
Main Results:
- The crystal structure of Cbl-c TKB was determined, revealing distinct structural features.
- Cbl-c TKB exhibited reduced structural flexibility upon phosphopeptide binding compared to other Cbl TKB domains.
- A mutation enhancing Cbl-c TKB's structural flexibility significantly increased its binding to target phosphoproteins.
Conclusions:
- Structural flexibility of the TKB domain is a key regulatory mechanism for Cbl-protein interactions.
- Modifications affecting TKB domain flexibility can alter Cbl-protein binding and impact PTK signaling.
- This finding provides insights into the regulation of PTK signaling by Cbl-family proteins.
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