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Related Concept Videos

Genome-wide Association Studies-GWAS01:11

Genome-wide Association Studies-GWAS

Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
Single Nucleotide Polymorphisms-SNPs01:05

Single Nucleotide Polymorphisms-SNPs

A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
Principles of Pharmacogenetics: Types of Genetic Variants01:27

Principles of Pharmacogenetics: Types of Genetic Variants

The human genome is over 99.9% identical between individuals, yet genetic differences exist at millions of bases. The human genome contains approximately 3 million variant positions per individual, many of which are heterozygous, contributing to genetic diversity and individual traits. Genetic variations include single-nucleotide polymorphisms (SNPs), insertions, deletions, and copy number variations (CNVs).SNPs, the most common variation, involve single-base changes in DNA. These can be...
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Pharmacogenetics of Phase II Enzymes: N-acetyltransferase, Thiopurine S-methyltransferase, UDP-glucuronosyltransferase

Phase II biotransformation reactions are essential for detoxifying and eliminating xenobiotics, including many pharmaceutical compounds. These reactions typically involve conjugation, the covalent attachment of polar endogenous groups such as glucuronic acid, sulfate, methyl, or acetyl moieties to functional groups introduced during Phase I metabolism. The resulting conjugates are more water-soluble, enabling efficient renal or biliary excretion.The major classes of Phase II enzymes include...
Pharmacogenetic Phenotypes: Alterations in Pharmacokinetics, Drug Targets and Biologic Milieu01:29

Pharmacogenetic Phenotypes: Alterations in Pharmacokinetics, Drug Targets and Biologic Milieu

Genetic variations significantly influence drug response through pharmacokinetics, receptor interactions, and biologic milieu modifications. Pharmacokinetic alterations impact drug metabolism and clearance, affecting efficacy and toxicity. Variants in drug-metabolizing enzymes, such as CYP2C9 and CYP2C19, alter drug activation and elimination. For example, CYP2C9 loss-of-function variants require lower warfarin doses to prevent excessive bleeding, while CYP2C19 variants reduce clopidogrel...
Comparing Copy Number Variations and SNPs02:26

Comparing Copy Number Variations and SNPs

Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
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Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
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Published on: June 21, 2018

The association between GJB2 gene polymorphism and psoriasis: a verification study.

Que-Ping Liu1, Li-Sha Wu, Fang-Fang Li

  • 1Department of Dermatology, Xiang-Ya Hospital Central South University, Changsha, Hunan, People's Republic of China.

Archives of Dermatological Research
|August 15, 2012
PubMed
Summary

This study found a specific genetic variation (GJB2 rs3751385:C>T) is less common in Chinese Han individuals with psoriasis. This suggests the GJB2 gene polymorphism may influence psoriasis susceptibility.

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Area of Science:

  • Genetics
  • Dermatology
  • Molecular Biology

Background:

  • Psoriasis is a chronic inflammatory skin condition with complex causes.
  • Connexin 26 (Cx26) is a gap junction protein highly expressed in psoriatic skin lesions.
  • Genome-wide association studies (GWAS) previously linked a GJB2 gene single nucleotide polymorphism (SNP) to psoriasis in the Chinese Han population.

Purpose of the Study:

  • To validate the association between the GJB2 rs3751385:C>T polymorphism and psoriasis susceptibility in the Chinese Han population.
  • To investigate the role of Cx26 in the genetic predisposition to psoriasis.

Main Methods:

  • Genotyping of the GJB2 rs3751385:C>T polymorphism using polymerase chain reaction restriction fragment length polymorphism (PCR-RFLP) assay.
  • Case-control study involving 371 psoriasis patients and 330 healthy controls from the Chinese Han population.

Main Results:

  • A statistically significant decreased frequency of the GJB2 rs3751385 C allele was observed in psoriasis patients compared to healthy controls (p = 6.02 × 10⁻⁵, OR = 0.793).
  • The GJB2 rs3751385:C>T polymorphism showed a protective effect against psoriasis in the studied population.

Conclusions:

  • The GJB2 gene polymorphism rs3751385:C>T is associated with psoriasis susceptibility in the Chinese Han population.
  • This finding supports the role of Cx26 in the pathogenesis of psoriasis and provides a potential genetic marker for the disease.