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Updated: May 19, 2026

Characterization of In Vitro Differentiation of Human Primary Keratinocytes by RNA-Seq Analysis
Published on: May 16, 2020
microRNA-31/factor-inhibiting hypoxia-inducible factor 1 nexus regulates keratinocyte differentiation
Han Peng1, Nihal Kaplan, Robert B Hamanaka
1Department of Dermatology, The Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Abstract:
Notch plays a critical role in the transition from proliferation to differentiation in the epidermis and corneal epithelium. Furthermore, aberrant Notch signaling is a feature of diseases like psoriasis, eczema, nonmelanoma skin cancer, and melanoma where differentiation and proliferation are impaired. Whereas much is known about the downstream events following Notch signaling, factors responsible for negatively regulating Notch receptor signaling after ligand activation are incompletely understood. Notch can undergo hydroxylation by factor-inhibiting hypoxia-inducible factor 1 (FIH-1); however, the biological significance of this phenomenon is unclear. Here we show that FIH-1 expression is up-regulated in diseased epidermis and corneal epithelium. Elevating FIH-1 levels in primary human epidermal keratinocytes (HEKs) and human corneal epithelial keratinocytes (HCEKs) impairs differentiation in submerged cultures and in a "three-dimensional" organotypic raft model of human epidermis, in part, via a coordinate decrease in Notch signaling. Knockdown of FIH-1 enhances keratinocyte differentiation. Loss of FIH-1 in vivo increased Notch activity in the limbal epithelium, resulting in a more differentiated phenotype. microRNA-31 (miR-31) is an endogenous negative regulator of FIH-1 expression that results in keratinocyte differentiation, mediated by Notch activation. Ectopically expressing miR-31 in an undifferentiated corneal epithelial cell line promotes differentiation and recapitulates a corneal epithelium in a three-dimensional raft culture model. Our results define a previously unknown mechanism for keratinocyte fate decisions where Notch signaling potential is, in part, controlled through a miR-31/FIH-1 nexus.
Insights
Factor-inhibiting hypoxia-inducible factor 1 (FIH-1) negatively regulates Notch signaling, impacting skin and corneal epithelial cell differentiation. Targeting this miR-31/FIH-1 pathway offers new therapeutic strategies for skin diseases.
Area of Science:
- Cell Biology
- Dermatology
- Ophthalmology
Background:
- Notch signaling is crucial for epidermal and corneal epithelial cell differentiation.
- Aberrant Notch signaling is implicated in skin diseases like psoriasis and cancer.
- Negative regulators of Notch signaling are not fully understood.
Purpose of the Study:
- To investigate the role of factor-inhibiting hypoxia-inducible factor 1 (FIH-1) in regulating Notch signaling and keratinocyte differentiation.
- To explore the biological significance of FIH-1 hydroxylation of Notch.
- To elucidate the miR-31/FIH-1 pathway in keratinocyte fate decisions.
Main Methods:
- Examined FIH-1 expression in diseased epidermis and corneal epithelium.
- Manipulated FIH-1 levels in human epidermal keratinocytes (HEKs) and human corneal epithelial keratinocytes (HCEKs).
- Utilized organotypic raft models and in vivo studies to assess differentiation and Notch activity.
- Investigated the role of microRNA-31 (miR-31) as a regulator of FIH-1.
Main Results:
- FIH-1 expression is elevated in diseased skin and corneal epithelium.
- Increased FIH-1 impairs keratinocyte differentiation by decreasing Notch signaling.
- FIH-1 knockdown enhances keratinocyte differentiation.
- Loss of FIH-1 in vivo increases Notch activity and promotes differentiation.
- miR-31 negatively regulates FIH-1, promoting Notch-mediated keratinocyte differentiation.
Conclusions:
- FIH-1 acts as a negative regulator of Notch signaling, impacting keratinocyte differentiation.
- The miR-31/FIH-1 axis represents a novel mechanism controlling keratinocyte fate.
- This pathway is a potential therapeutic target for skin and corneal diseases involving impaired differentiation.
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