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Updated: May 19, 2026

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
Published on: December 7, 2021
Differences between macrolide-resistant and -susceptible Streptococcus pyogenes: importance of clonal properties in
C Silva-Costa1, A Friães, M Ramirez
1Instituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisbon, Portugal.
Abstract:
A steady decline in macrolide resistance among Streptococcus pyogenes (group A streptococci [GAS]) in Portugal was reported during 1999 to 2006. This was accompanied by alterations in the prevalence of macrolide resistance phenotypes and in the clonal composition of the population. In order to test whether changes in the macrolide-resistant population reflected the same changing patterns of the overall population, we characterized both macrolide-susceptible and -resistant GAS associated with a diagnosis of tonsillo-pharyngitis recovered in the period from 2000 to 2005 in Portugal. Pulsed-field gel electrophoresis (PFGE) profiling was the best predictor of emm type and the only typing method that could discriminate clones associated with macrolide resistance and susceptibility within each emm type. Six PFGE clusters were significantly associated with macrolide susceptibility: T3-emm3-ST406, T4-emm4-ST39, T1-emm1-ST28, T6-emm6-ST382, B3264-emm89-ST101/ST408, and T2-emm2-ST55. Four PFGE clusters were associated with macrolide resistance: T4-emm4-ST39, T28-emm28-ST52, T12-emm22-ST46, and T1-emm1-ST28. We found no evidence for frequent ongoing horizontal transfer of macrolide resistance determinants. The diversity of the macrolide-resistant population was lower than that of susceptible isolates. The differences found between the two populations suggest that the macrolide-resistant population of GAS has its own dynamics, independent of the behavior of the susceptible population.
Insights
Macrolide resistance in Streptococcus pyogenes (group A streptococci) showed declining trends. Resistant strains exhibited distinct population dynamics separate from susceptible strains, indicating unique evolutionary patterns.
Area of Science:
- Microbiology
- Epidemiology
- Molecular Typing
Background:
- Macrolide resistance in Streptococcus pyogenes (group A streptococci, GAS) has been a growing concern.
- A decline in macrolide resistance among GAS in Portugal was observed between 1999 and 2006.
- Changes in resistance phenotypes and clonal composition accompanied this decline.
Purpose of the Study:
- To investigate if the population dynamics of macrolide-resistant GAS mirrored those of the overall GAS population.
- To characterize both susceptible and resistant GAS strains causing tonsillopharyngitis in Portugal from 2000 to 2005.
Main Methods:
- Pulsed-field gel electrophoresis (PFGE) was employed for molecular typing of GAS isolates.
- PFGE was used to predict emm types and differentiate clones associated with macrolide resistance and susceptibility.
- Analysis focused on isolates recovered between 2000 and 2005.
Main Results:
- PFGE profiling effectively predicted emm type and distinguished resistant from susceptible clones within emm types.
- Specific PFGE clusters were significantly associated with either macrolide susceptibility or resistance.
- No evidence of frequent horizontal gene transfer of macrolide resistance determinants was found.
- The macrolide-resistant GAS population displayed lower diversity compared to susceptible isolates.
Conclusions:
- The macrolide-resistant GAS population exhibits distinct population dynamics, separate from susceptible strains.
- These findings suggest independent evolutionary trajectories for resistant and susceptible GAS populations.
- Understanding these dynamics is crucial for managing antibiotic resistance in GAS infections.
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