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Related Concept Videos

Genome-wide Association Studies-GWAS01:11

Genome-wide Association Studies-GWAS

Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
Single Nucleotide Polymorphisms-SNPs01:05

Single Nucleotide Polymorphisms-SNPs

A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
Inflammatory Bowel Disease III: Crohn's Disease01:25

Inflammatory Bowel Disease III: Crohn's Disease

Crohn’s disease is a chronic, relapsing form of inflammatory bowel disease characterized by segmental, transmural inflammation that can affect any part of the gastrointestinal tract. Its pathogenesis arises from a combination of genetic susceptibility, environmental exposures, epithelial barrier dysfunction, and immune dysregulation. Together, these factors lead to an exaggerated immune response against components of the gut microbiome.Genetic and Environmental InfluencesMultiple genetic...
Pleiotropy01:33

Pleiotropy

Pleiotropy is the phenomenon in which a single gene impacts multiple, seemingly unrelated phenotypic traits. For example, defects in the SOX10 gene cause Waardenburg Syndrome Type 4, or WS4, which can cause defects in pigmentation, hearing impairments, and an absence of intestinal contractions necessary for elimination. This diversity of phenotypes results from the expression pattern of SOX10 in early embryonic and fetal development. SOX10 is found in neural crest cells that form melanocytes,...
Antigens Involved in Adaptive Immunity01:26

Antigens Involved in Adaptive Immunity

An antigen is any substance the immune system identifies as foreign and potentially harmful to the body, prompting an immune response. Antigens have two functional properties: immunogenicity and reactivity. Immunogenicity is the ability of an antigen to stimulate a specific immune response. At the same time, reactivity describes the antigen's ability to react with the cells and antibodies produced in response to it.
Complete Antigens
Complete antigens possess both immunogenicity and reactivity.

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Related Experiment Video

Updated: May 19, 2026

Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
05:53

Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry

Published on: June 21, 2018

Conditional analysis identifies three novel major histocompatibility complex loci associated with psoriasis.

Jo Knight1, Sarah L Spain, Francesca Capon

  • 1National Institute for Health Research, Biomedical Research Centre, Guy’s and St Thomas’ NHS Foundation Trust, Toronto, ON, Canada M5T 1R8.

Human Molecular Genetics
|August 24, 2012
PubMed
Summary

Researchers identified four new genetic risk loci for psoriasis within the major histocompatibility complex (MHC) region. These findings enhance our understanding of psoriasis genetics, implicating immune system regulation in the chronic inflammatory skin disease.

Related Experiment Videos

Last Updated: May 19, 2026

Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
05:53

Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry

Published on: June 21, 2018

Area of Science:

  • Immunology
  • Genetics
  • Dermatology

Background:

  • Psoriasis is a prevalent chronic inflammatory skin condition with a significant genetic component.
  • The major histocompatibility complex (MHC) region contains key psoriasis susceptibility loci, notably HLA-Cw*0602.
  • Linkage disequilibrium within the MHC complicates the identification of independent risk loci.

Purpose of the Study:

  • To identify and validate additional independent genetic risk loci for psoriasis within the MHC region.
  • To refine the understanding of the genetic architecture underlying psoriasis susceptibility.

Main Methods:

  • Utilized large psoriasis case and control datasets for statistical conditional analysis.
  • Performed replication studies in independent sample cohorts to validate identified associations.
  • Focused analysis on the major histocompatibility complex (MHC) region.

Main Results:

  • Identified and replicated four independent genetic association signals within the MHC, in addition to the known HLA-C locus.
  • Three of the four novel signals were detected at SNPs rs2507971, rs9260313, and rs66609536, located near MICB, HLA-A, and HCG9.
  • The previously identified locus was near MICA, and the novel loci were near MICB, HLA-A, and HCG9, highlighting the immunological relevance of these genes.

Conclusions:

  • The study successfully identified novel genetic loci associated with psoriasis risk within the MHC.
  • The findings underscore the role of genes encoding MHC class I-related proteins, such as MICA and MICB, in psoriasis pathogenesis.
  • These discoveries contribute to a more comprehensive model of inherited susceptibility to psoriasis, involving skin barrier and immune dysregulation.