Related Experiment Video
Updated: May 19, 2026

Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
Published on: August 9, 2019
Cancer cell growth suppression by a 62nt AU-rich RNA from C/EBPβ 3'UTR through competitive binding with HuR
Da-Quan Sun1, Ying Wang, Ding-Gan Liu
1State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, China.
Abstract:
AU-rich elements are functional motifs in the 3'untranslated region of mRNA and are binding sites for the RNA binding protein HuR, an mRNA stabilizer and translation enhancer implicated in carcinogenesis. It is not clear whether, and, if so, how the AU-rich elements function in cells when they are separated from their mRNA and form an independent RNA species. Here, we show that a short RNA with AU-rich elements derived from C/EBPβ 3'UTR suppressed growth in a human liver cancer cell line. It specifically bound HuR, and it competed with C/EBPβ mRNA in order to bind to HuR. Our results provide evidence that the cancer cell growth suppression by this 62nt RNA containing AU-rich elements may be due to competitive binding to HuR. This work may open new options for the development of novel anti-cancer drugs.
Insights
Short RNAs containing AU-rich elements can suppress cancer growth by binding to the HuR protein. This competitive binding may offer new avenues for developing targeted anti-cancer drugs.
Area of Science:
- Molecular Biology
- Cancer Research
- RNA Biology
Background:
- AU-rich elements (AREs) are key mRNA motifs binding HuR, a protein that stabilizes and enhances translation.
- HuR's role in carcinogenesis is established, but the function of AREs independent of mRNA is unclear.
- Investigating independent ARE function could reveal novel cancer therapeutic targets.
Purpose of the Study:
- To determine if isolated AU-rich elements can affect cancer cell behavior.
- To elucidate the mechanism by which such RNAs might impact cancer growth.
- To explore the potential of ARE-containing RNAs as anti-cancer agents.
Main Methods:
- Synthesized a 62-nucleotide RNA containing AU-rich elements from C/EBPβ 3'UTR.
- Tested the RNA's effect on a human liver cancer cell line's growth.
- Performed biochemical assays to assess HuR binding and competition with C/EBPβ mRNA.
Main Results:
- The synthetic RNA significantly suppressed human liver cancer cell growth.
- The RNA specifically bound to the HuR protein.
- The RNA competed with C/EBPβ mRNA for HuR binding, indicating a mechanism of action.
Conclusions:
- Independent AU-rich element-containing RNAs can suppress cancer cell growth.
- Competitive binding of HuR by these RNAs is a likely mechanism for growth suppression.
- This finding suggests a novel strategy for developing RNA-based anti-cancer therapeutics.
Related Concept Videos
Abnormal Proliferation
Negative Regulator Molecules
Cancer-Critical Genes II: Tumor Suppressor Genes
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
Cancer-Critical Genes II: Tumor Suppressor Genes
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
The Retinoblastoma Gene
The first-ever tumor suppressor gene called Rb was identified in retinoblastoma - a rare eye tumor in children. In inherited forms of the disease, a child inherits one defective copy of the Rb gene, which predisposes them to retinoblastoma. However,...
Experimental RNAi

