Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Video

Updated: May 19, 2026

Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information
09:37

Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information

Published on: August 15, 2019

Web-based digital gene expression atlases for the mouse.

Lars Geffers1, Bernhard Herrmann, Gregor Eichele

  • 1Department of Genes and Behavior, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany. lars.geffers@mpibpc.mpg.de

Mammalian Genome : Official Journal of the International Mammalian Genome Society
|September 1, 2012
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Regulation of hedonic feeding rhythms by circadian clocks in leptin-receptive neurons.

Molecular metabolism·2025
Same author

Deep sequencing of sncRNAs reveals hallmarks and regulatory modules of the transcriptome during Parkinson's disease progression.

Nature aging·2023
Same author

RNA sequencing indicates widespread conservation of circadian clocks in marine zooplankton.

NAR genomics and bioinformatics·2023
Same author

Extracellular vesicles derived from the choroid plexus trigger the differentiation of neural stem cells.

Journal of extracellular vesicles·2022
Same author

Postnatal expression of the lysine methyltransferase SETD1B is essential for learning and the regulation of neuron-enriched genes.

The EMBO journal·2021
Same author

Low-Expressing Synucleinopathy Mouse Models Based on Oligomer-Forming Mutations and C-Terminal Truncation of α-Synuclein.

Frontiers in neuroscience·2021
Same journal

Neuroinflammation in glaucoma: a myriad of cellular pathways and players.

Mammalian genome : official journal of the International Mammalian Genome Society·2026
Same journal

Elucidating the therapeutic targets and multi-target mechanisms of salvianolic acid A for diabetic nephropathy.

Mammalian genome : official journal of the International Mammalian Genome Society·2026
Same journal

DeepDisSNP: Predicting disease-associated SNPs by representation learning on disease and SNP linkage disequilibrium networks.

Mammalian genome : official journal of the International Mammalian Genome Society·2026
Same journal

A comprehensive full-length transcriptome atlas across multiple organs of an Indian yak breed-Arunachali.

Mammalian genome : official journal of the International Mammalian Genome Society·2026
Same journal

Detection of a complex chromosomal rearrangement in a novel mouse mutant by optical genome mapping.

Mammalian genome : official journal of the International Mammalian Genome Society·2026
Same journal

The evolution of AI-integrated genome editing and its challenges.

Mammalian genome : official journal of the International Mammalian Genome Society·2026
See all related articles

Explore seven gene expression databases for comprehensive mouse brain and embryo transcriptome data. These resources offer detailed insights into gene expression patterns, aiding developmental biology and neuroscience research.

Area of Science:

  • Developmental Biology
  • Neuroscience
  • Bioinformatics

Background:

  • Publicly available mouse gene expression data from in situ hybridization has significantly advanced in scope and resolution over 15 years.
  • The post-genomic era enables comprehensive studies of full transcriptomes in mouse brain and embryo.
  • Numerous databases now provide access to extensive mouse gene expression datasets.

Purpose of the Study:

  • To introduce and review seven current databases for mouse gene expression data.
  • To provide a user-oriented summary of how to interrogate these databases.
  • To assess the experimental focus, coverage, data quality, and annotation of each resource.

Main Methods:

  • Review of seven prominent mouse gene expression databases: MAMEP, EMBRYS, GenePaint, EURExpress, EuReGene, BGEM, and GENSAT.

More Related Videos

Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine
10:40

Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine

Published on: December 22, 2017

Exploring the Effects of Spaceflight on Mouse Physiology using the Open Access NASA GeneLab Platform
11:08

Exploring the Effects of Spaceflight on Mouse Physiology using the Open Access NASA GeneLab Platform

Published on: January 13, 2019

Related Experiment Videos

Last Updated: May 19, 2026

Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information
09:37

Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information

Published on: August 15, 2019

Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine
10:40

Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine

Published on: December 22, 2017

Exploring the Effects of Spaceflight on Mouse Physiology using the Open Access NASA GeneLab Platform
11:08

Exploring the Effects of Spaceflight on Mouse Physiology using the Open Access NASA GeneLab Platform

Published on: January 13, 2019

  • Evaluation of database features including experimental focus, data coverage, assessment, and annotation.
  • Analysis of integrated analytic tools and links to external databases.

    • Main Results:

    • Seven key databases (MAMEP, EMBRYS, GenePaint, EURExpress, EuReGene, BGEM, GENSAT) offer access to large collections of mouse gene expression data.
    • Each database presents unique strengths in experimental focus, data coverage, and annotation quality.
    • Databases incorporate analytic tools and interconnections to related resources for enhanced data exploration.

    Conclusions:

    • These seven databases represent valuable resources for researchers studying mouse gene expression.
    • Understanding the specific features of each database is crucial for effective data interrogation.
    • The reviewed resources facilitate in-depth analysis of mouse brain and embryo transcriptomes.