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Updated: May 19, 2026

A Protocol for Analyzing Hepatitis C Virus Replication
Published on: June 26, 2014
Hepatitis C virus translation preferentially depends on active RNA replication
Helene Minyi Liu1, Hideki Aizaki, Keigo Machida
1Department of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America. michlai@gate.sinica.edu.tw
Hepatitis C virus (HCV) RNA replication and protein translation are coupled processes. Newly synthesized viral RNA and proteins colocalize, suggesting they occur together in a compartment called the replicasome.
Area of Science:
- Virology
- Molecular Biology
- Cell Biology
Background:
- Hepatitis C virus (HCV) replication initiates on endoplasmic reticulum (ER)-derived membranes.
- HCV RNA moves from the ER during its lifecycle, but its relationship with translation is unclear.
Purpose of the Study:
- To investigate the regulation of HCV RNA translation by its trafficking.
- To determine if HCV RNA replication and protein translation occur at the same site.
Main Methods:
- Pulse-chase studies with BrU-labeled HCV RNA.
- Inhibition of ER-Golgi transport with nocodazole.
- Inhibition of viral RNA synthesis using an NS5B inhibitor.
- Analysis of replication-defective HCV replicons and NS5B mutants.
- Live cell labeling of newly synthesized HCV RNA and proteins.
Main Results:
- Blocking HCV RNA transport to the Golgi enhanced protein translation, suggesting translation occurs near RNA synthesis.
- HCV protein translation decreased upon inhibition of RNA synthesis, even with stable RNA levels.
- Replication-defective or mutated HCV RNA showed significantly reduced translation.
- Newly synthesized HCV proteins colocalized with newly synthesized viral RNA.
Conclusions:
- HCV RNA translation is coupled to RNA replication.
- Replication and translation likely occur together in the same subcellular membrane compartments, termed the "replicasome".
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