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Updated: May 19, 2026

Comprehensive Workflow of Mass Spectrometry-based Shotgun Proteomics of Tissue Samples
Published on: November 13, 2021
Mass spectrometry for translational proteomics: progress and clinical implications.
Erin Shammel Baker1, Tao Liu1, Vladislav A Petyuk1
1Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Mass spectrometry (MS) proteomics offers sensitive and specific analysis for biological and biomedical research. Advances in MS technology promise improved biomarker discovery and clinical applications for disease diagnosis and drug development.
Area of Science:
- Biochemistry
- Analytical Chemistry
- Biomedical Science
Background:
- Mass spectrometry (MS)-based proteomics has gained recognition for its high sensitivity, specificity, and throughput in biological and biomedical research.
- Proteomic measurements are crucial for understanding cellular responses, disease mechanisms, and post-translational modifications.
Purpose of the Study:
- To review the current state of MS-based proteomics, including its advantages and limitations.
- To highlight the translational applications of MS-based proteomics in protein biomarker studies.
Main Methods:
- Review of current literature on mass spectrometry techniques for proteomic analysis.
- Discussion of technological improvements in sample processing, instrumentation, data acquisition, and informatics.
- Analysis of targeted and global quantitative MS approaches for biomarker verification and discovery.
Main Results:
- MS-based proteomics is valuable for biomarker verification (targeted analysis) but faces challenges in biomarker discovery (global quantitative analysis).
- Technological advancements are continuously improving MS applications, enhancing protein change detection.
- Promising biomarker candidates can be discovered, verified pre-clinically, and used in clinical studies.
Conclusions:
- MS-based proteomics holds significant promise for advancing early disease diagnosis, drug development, and therapeutic interventions.
- Continued development of MS technologies and informatics will further enhance its clinical utility.
- MS-based proteomics is a powerful tool for translational research in protein biomarker studies.
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