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Updated: May 18, 2026

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Two-photon axotomy and time-lapse confocal imaging in live zebrafish embryos
Published on: February 16, 2009
Imaging axon pathfinding in zebrafish in vivo.
Cold Spring Harbor Protocols
|September 6, 2012
Summary
Visualizing axon pathfinding in live zebrafish embryos allows researchers to observe growth cone decisions in real-time. This method enables the study of molecular mechanisms guiding neural development and axon guidance.
Area of Science:
- Neuroscience
- Developmental Biology
- Cell Biology
Background:
- Axon pathfinding is a dynamic process crucial for neural circuit formation.
- Growth cones make rapid decisions in response to environmental cues during development.
- In vivo visualization is essential for understanding growth cone behavior and molecular signaling.
Purpose of the Study:
- To describe a protocol for live imaging of axon pathfinding in zebrafish embryos.
- To enable high-resolution, long-term observation of axonal growth cones in vivo.
- To facilitate the study of molecular mechanisms underlying axon guidance decisions.
Main Methods:
- Stabilization and preparation of live zebrafish embryos for microscopy.
- Imaging of fluorescently labeled axonal tracts at high spatial and temporal resolution.
- Utilizing zebrafish's ex utero development for accessibility to major axon tracts.
Main Results:
- The protocol allows for imaging up to 72 hours in live zebrafish embryos.
- High spatial and temporal resolution imaging of axon pathfinding is achievable.
- The method has been successfully applied to retinotectal axon pathfinding.
Conclusions:
- This protocol provides a powerful tool for studying axon pathfinding in vivo.
- Zebrafish embryos are a suitable model for live imaging of neural development.
- The technique can be adapted to investigate various axon tracts and molecular players.

