Related Experiment Video
Updated: May 18, 2026

System for Efficacy and Cytotoxicity Screening of Inhibitors Targeting Intracellular Mycobacterium tuberculosis
Published on: April 5, 2017
Evaluation of CoA biosynthesis proteins of Mycobacterium tuberculosis as potential drug targets
Anisha Ambady1, Disha Awasthy, Reena Yadav
1AstraZeneca R & D, Infection iMed, Avishkar, Bellary Road, Hebbal, Bangalore, India.
Abstract:
Coenzyme A biosynthesis pathway proteins are potential targets for developing inhibitors against bacteria including Mycobacterium tuberculosis. We have evaluated two enzymes in this pathway: phosphopantetheine adenylyltransferase (CoaD) and dephospho CoA kinase (CoaE) for essentiality and selectivity. Based on the previous transposon mutagenesis studies, coaD had been predicted to be a non-essential gene in M. tuberculosis. Our bioinformatics analysis showed that there is no other functional homolog of this enzyme in M. tuberculosis, which suggests that coaD should be an essential gene. In order to get an unambiguous answer on the essentiality of coaD, we attempted inactivation of coaD in wild type and merodiploid backgrounds. It was found that coaD could only be inactivated in the presence of an additional gene copy, confirming it to be an essential gene. Using a similar approach we found that CoaE was also essential for the survival of M. tuberculosis. RT-PCR analysis showed that both coaD and coaE were transcribed in M. tuberculosis. Amino acids alignment and phylogenetic analysis showed CoaD to be distantly related to the human counterpart while CoaE was found to be relatively similar to the human enzyme. Analysis of CoaD and CoaE structures at molecular level allowed us to identify unique residues in the Mtb proteins, thus providing a selectivity handle. The essentiality and selectivity analysis combined with the published biochemical characterization of CoaD and CoaE makes them suitable targets for developing inhibitors against M. tuberculosis.
Insights
Coenzyme A pathway enzymes phosphopantetheine adenylyltransferase (CoaD) and dephospho CoA kinase (CoaE) are essential for Mycobacterium tuberculosis survival. Unique structural features offer potential for developing targeted inhibitors against this bacterium.
Area of Science:
- Microbiology
- Biochemistry
- Drug Discovery
Background:
- Coenzyme A (CoA) biosynthesis pathway proteins are potential targets for antimicrobial drug development.
- Two key enzymes, phosphopantetheine adenylyltransferase (CoaD) and dephospho CoA kinase (CoaE), were investigated in Mycobacterium tuberculosis.
- Previous studies suggested CoaD might be non-essential, necessitating further investigation.
Purpose of the Study:
- To definitively determine the essentiality of CoaD and CoaE in Mycobacterium tuberculosis.
- To assess the selectivity of these enzymes compared to their human counterparts.
- To identify potential unique structural features for targeted inhibitor design.
Main Methods:
- Gene inactivation studies in wild-type and merodiploid M. tuberculosis strains.
- Reverse Transcription Polymerase Chain Reaction (RT-PCR) for gene transcription analysis.
- Bioinformatics analysis including amino acid alignment, phylogenetic analysis, and structural comparison.
Main Results:
- CoaD was confirmed as essential, requiring an additional gene copy for inactivation.
- CoaE was also found to be essential for M. tuberculosis survival.
- Both coaD and coaE genes are actively transcribed.
- CoaD exhibits distant homology to human CoaD, while CoaE shows greater similarity to its human counterpart.
- Unique amino acid residues were identified in M. tuberculosis CoaD and CoaE structures.
Conclusions:
- CoaD and CoaE are essential enzymes for Mycobacterium tuberculosis.
- Distinct structural features in M. tuberculosis CoaD and CoaE provide a basis for selective inhibitor development.
- These enzymes represent promising targets for novel anti-tuberculosis therapies.
More Related Videos
09:57Visualization of the Charcoal Agar Resazurin Assay for Semi-quantitative, Medium-throughput Enumeration of Mycobacteria
Published on: December 14, 2016
10:29A High-throughput Compatible Assay to Evaluate Drug Efficacy against Macrophage Passaged Mycobacterium tuberculosis
Published on: March 24, 2017
Related Concept Videos
Inhibitors of Bacterial Protein Synthesis
Pharmacogenomics: Identification of New Drug Targets
Targets for Drug Action: Overview
Receptors are either membrane-spanning or intracellular proteins, which upon binding a ligand, get activated and transmit the signal downstream to elicit a response. Drugs bind receptors, either mimicking the action of endogenous ligands or blocking the receptor activity to bring about a modified response. Nearly 35% of approved drugs target the G...
Biosynthesis in Bacteria
Amino Acid Biosynthetic Pathways
Inhibitors of Gram-positive Cell Wall Synthesis