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Published on: May 16, 2017
Characterization of genes encoding for acquired bacitracin resistance in Clostridium perfringens
Audrey Charlebois1, Louis-Alexandre Jalbert, Josée Harel
1Department of pathology and microbiology, Faculty of Veterinary Medicine of the University of Montreal, Centre de Recherche en Infectiologie Porcine, Saint-Hyacinthe, Québec, Canada.
Abstract:
Phenotypic bacitracin resistance has been reported in Clostridium perfringens. However, the genes responsible for the resistance have not yet been characterized. Ninety-nine C. perfringens isolates recovered from broilers and turkeys were tested for phenotypic bacitracin resistance. Bacitracin MIC(90) (>256 µg/ml) was identical for both turkey and chicken isolates; whereas MIC(50) was higher in turkey isolates (6 µg/ml) than in chicken isolates (3 µg/ml). Twenty-four of the 99 isolates showed high-level bacitracin resistance (MIC breakpoint >256 µg/ml) and the genes encoding for this resistance were characterized in C. perfringens c1261_A strain using primer walking. Sequence analysis and percentages of amino acid identity revealed putative genes encoding for both an ABC transporter and an overproduced undecaprenol kinase in C. perfringens c1261_A strain. These two mechanisms were shown to be both encoded by the putative bcrABD operon under the control of a regulatory gene, bcrR. Efflux pump inhibitor thioridazine was shown to increase significantly the susceptibility of strain c1261_A to bacitracin. Upstream and downstream from the bcr cluster was an IS1216-like element, which may play a role in the dissemination of this resistance determinant. Pulsed-field gel electrophoresis with prior double digestion with I-CeuI/MluI enzymes followed by hybridization analyses revealed that the bacitracin resistance genes bcrABDR were located on the chromosome. Semi-quantitative RT-PCR demonstrated that this gene cluster is expressed under bacitracin stress. Microarray analysis revealed the presence of these genes in all bacitracin resistant strains. This study reports the discovery of genes encoding for a putative ABC transporter and an overproduced undecaprenol kinase associated with high-level bacitracin resistance in C. perfringens isolates from turkeys and broiler chickens.
Insights
Genes responsible for high-level bacitracin resistance in Clostridium perfringens were identified. The study found an ABC transporter and undecaprenol kinase, encoded by the bcrABD operon, confer resistance in poultry isolates.
Area of Science:
- Microbiology
- Genetics
- Antimicrobial Resistance
Background:
- Phenotypic bacitracin resistance is observed in Clostridium perfringens.
- The genetic basis for this resistance in C. perfringens remains largely uncharacterized.
- Bacitracin resistance is a concern in poultry production due to its use as a feed additive.
Purpose of the Study:
- To characterize the genes responsible for high-level bacitracin resistance in Clostridium perfringens.
- To investigate the mechanisms of bacitracin resistance in C. perfringens isolates from poultry.
- To identify the genetic elements and regulatory mechanisms involved in bacitracin resistance.
Main Methods:
- Phenotypic testing of 99 C. perfringens isolates for bacitracin resistance (MIC determination).
- Genetic characterization using primer walking, sequence analysis, and amino acid identity comparisons.
- Molecular techniques including pulsed-field gel electrophoresis, hybridization, semi-quantitative RT-PCR, and microarray analysis.
- Assessment of efflux pump inhibitor (thioridazine) effects on bacitracin susceptibility.
Main Results:
- High-level bacitracin resistance (MIC >256 µg/ml) was observed in 24 out of 99 C. perfringens isolates.
- Putative genes encoding an ABC transporter (bcrA) and overproduced undecaprenol kinase (bcrB) were identified in strain c1261_A.
- These genes, along with a regulatory gene (bcrR), form the bcrABD operon, located on the chromosome.
- The bcrABD cluster is expressed under bacitracin stress and present in all resistant strains.
- An IS1216-like element was found flanking the bcr cluster, suggesting a role in dissemination.
Conclusions:
- The bcrABD operon, encoding an ABC transporter and undecaprenol kinase, is responsible for high-level bacitracin resistance in Clostridium perfringens.
- This resistance mechanism is present in C. perfringens isolates from both turkeys and broiler chickens.
- The findings provide insights into the genetic basis of bacitracin resistance in a significant poultry pathogen.
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