Variation in APOL1 Contributes to Ancestry-Level Differences in HDLc-Kidney Function Association

Amy Rebecca Bentley1, Ayo P Doumatey, Guanjie Chen

  • 1Center for Research on Genomics and Global Health, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892-5635, USA.

Insights

High-density lipoprotein cholesterol (HDLc) levels show varied associations with estimated glomerular filtration rate (eGFR) across ancestries. An inverse relationship was observed in African ancestry populations, potentially linked to APOL1 gene variants.

Area of Science:

  • Nephrology
  • Genetics
  • Cardiovascular Science

Background:

  • Low high-density lipoprotein cholesterol (HDLc) is linked to chronic kidney disease.
  • The relationship between HDLc and estimated glomerular filtration rate (eGFR) in diverse populations is not well understood.

Purpose of the Study:

  • To investigate the association between HDLc and eGFR across different ancestral groups.
  • To explore the role of APOL1 gene variants in the HDLc-eGFR relationship among individuals of African ancestry.

Main Methods:

  • Cross-sectional analysis of HDLc and eGFR in Han Chinese, West Africans, and African Americans.
  • Examination of nationally representative NHANES data from European Americans and African Americans.
  • Investigation of the interaction between APOL1 risk genotype and HDLc-eGFR association in African Americans.

Main Results:

  • HDLc was positively associated with eGFR in Han Chinese and European Americans.
  • An inverse association between HDLc and eGFR was observed in West Africans, African Americans, and in NHANES African Americans.
  • The inverse HDLc-eGFR association in African Americans was significant only among those with the APOL1 risk genotype.

Conclusions:

  • The association between HDLc and eGFR differs significantly by ancestry.
  • Genetic factors, specifically APOL1 variants, may contribute to an inverse HDLc-eGFR association in African ancestry populations.
  • APOL1's influence on kidney disease risk might involve HDLc, suggesting a novel mechanism.

Related Concept Videos

Pharmacogenetic Phenotypes: Alterations in Pharmacokinetics, Drug Targets and Biologic Milieu01:29

Pharmacogenetic Phenotypes: Alterations in Pharmacokinetics, Drug Targets and Biologic Milieu

Genetic variations significantly influence drug response through pharmacokinetics, receptor interactions, and biologic milieu modifications. Pharmacokinetic alterations impact drug metabolism and clearance, affecting efficacy and toxicity. Variants in drug-metabolizing enzymes, such as CYP2C9 and CYP2C19, alter drug activation and elimination. For example, CYP2C9 loss-of-function variants require lower warfarin doses to prevent excessive bleeding, while CYP2C19 variants reduce clopidogrel...
Pharmacogenomics: Identification of New Drug Targets01:29

Pharmacogenomics: Identification of New Drug Targets

Advances in genomics have profoundly influenced drug discovery by increasing both the speed and accuracy of pharmaceutical development. Pharmacogenomics, which examines how genetic variation influences drug response, facilitates the identification of novel therapeutic targets and enables patient stratification for personalized treatment. These strategies contribute to improved drug efficacy, minimized adverse effects, and more efficient clinical trial design.Mapping genetic differences...
Principles of Pharmacogenetics: Types of Genetic Variants01:27

Principles of Pharmacogenetics: Types of Genetic Variants

The human genome is over 99.9% identical between individuals, yet genetic differences exist at millions of bases. The human genome contains approximately 3 million variant positions per individual, many of which are heterozygous, contributing to genetic diversity and individual traits. Genetic variations include single-nucleotide polymorphisms (SNPs), insertions, deletions, and copy number variations (CNVs).SNPs, the most common variation, involve single-base changes in DNA. These can be...
Pharmacogenetics of Drug Transporters: P-Glycoprotein and Solute Carrier Transporters01:16

Pharmacogenetics of Drug Transporters: P-Glycoprotein and Solute Carrier Transporters

The pharmacogenetics of drug transporters is increasingly recognized as a critical factor influencing interindividual variability in drug absorption, distribution, and elimination. These membrane-bound proteins regulate drugs' movement across cellular barriers by actively pumping them out (efflux) or facilitating their uptake (influx). Among the major transporter families, ATP-binding cassette (ABC) and solute carrier (SLC) transporters play particularly prominent roles. Genetic polymorphisms...
Genome-wide Association Studies-GWAS01:11

Genome-wide Association Studies-GWAS

Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
Pharmacogenetics of Drug Targets: β₂-Adrenergic Receptors, Apo E, Thymidylate Synthase01:11

Pharmacogenetics of Drug Targets: β₂-Adrenergic Receptors, Apo E, Thymidylate Synthase

Genetic polymorphisms in drug targets have emerged as critical determinants of interindividual variability in drug response and toxicity. Pharmacogenomic investigations increasingly focus on identifying these variations to personalize and optimize therapeutic interventions. A drug target may be a receptor, enzyme, or signaling protein involved in pharmacologic responses or disease-related pathways. While early pharmacogenetic studies focused primarily on drug metabolism, current research...