Related Experiment Video
Updated: May 18, 2026

HOX Loci Focused CRISPR/sgRNA Library Screening Identifying Critical CTCF Boundaries
Published on: March 31, 2019
Generation of Dhx9-deficient clones in T-cell development with a mitotic recombination technique
1Institute of Developmental Biology and Molecular Medicine, School of Life Science, Fudan University, Shanghai, China.
Abstract:
Mitotic recombination is an effective tool for generating mutant clones in somatic tissues. Because of difficulties associated with detecting and quantifying mutant clones in mice, this technique is limited to analysis of growth-related phenotypes induced by loss function of tumor suppressor genes. Here, we used the polymorphic CD45.1/CD45.2 alleles on chromosome 1 as pan-hematopoietic markers to track mosaic clones generated through mitotic recombination in developing T cells. We show that lineage-specific mitotic recombination can be induced and reliably detected as CD45.1 or CD45.2 homozygous clones from the CD45.1/CD45.2 heterozygous background. We have applied this system in the analysis of a lethal mutation in the Dhx9 gene. Mosaic analysis revealed a stage-specific role for Dhx9 during T-cell maturation. Thus, the experimental system described in this study offers a practical means for mosaic analysis of germline mutations in the hematopoietic system.
Insights
Researchers developed a new method using CD45.1/CD45.2 markers to track mutant clones in developing T cells. This technique enables mosaic analysis of mutations, revealing a stage-specific role for the Dhx9 gene in T-cell maturation.
Area of Science:
- Genetics
- Immunology
- Developmental Biology
Background:
- Mitotic recombination is a valuable tool for creating mutant clones in somatic tissues.
- Previous limitations in detecting and quantifying mutant clones in mice restricted its use, primarily to growth-related phenotypes from tumor suppressor gene loss-of-function.
- A novel approach is needed to expand the application of mitotic recombination for studying various gene functions in complex tissues.
Purpose of the Study:
- To establish a robust system for lineage-specific mosaic analysis in the hematopoietic system.
- To utilize pan-hematopoietic markers for tracking mitotic recombination-induced clones in developing T cells.
- To investigate the function of the Dhx9 gene during T-cell development using this new mosaic analysis system.
Main Methods:
- Utilized polymorphic CD45.1/CD45.2 alleles on chromosome 1 as pan-hematopoietic markers.
- Induced lineage-specific mitotic recombination in a CD45.1/CD45.2 heterozygous background.
- Detected and quantified homozygous CD45.1 or CD45.2 mutant clones within the developing T cell population.
- Applied this system to analyze a lethal mutation in the Dhx9 gene.
Main Results:
- Successfully induced and reliably detected lineage-specific mitotic recombination as CD45.1 or CD45.2 homozygous clones.
- Demonstrated the feasibility of tracking mosaic clones in developing T cells.
- Mosaic analysis of the Dhx9 mutation revealed a critical, stage-specific role for Dhx9 during T-cell maturation.
Conclusions:
- The developed experimental system provides a practical and effective method for mosaic analysis of germline mutations in the hematopoietic system.
- This approach overcomes previous limitations in clone detection and quantification.
- The study highlights the utility of this system for dissecting gene function during hematopoietic development, exemplified by the findings on Dhx9.
