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Updated: May 18, 2026

Optimized Bone Sampling Protocols for the Retrieval of Ancient DNA from Archaeological Remains
Published on: November 30, 2021
Field contamination of skeletonized human remains with exogenous DNA
Suni M Edson1, Alexander F Christensen
1Armed Forces DNA Identification Laboratory, 115 Purple Heart Drive, DAFB, DE 19902, USA. Suni.M.Edson@us.army.mil
Abstract:
The Armed Forces DNA Identification Laboratory reports the mitochondrial DNA (mtDNA) sequences of over 800 skeletal samples a year for the Joint POW/MIA Accounting Command-Central Identification Laboratory. These sequences are generated from degraded skeletal remains that are presumed to belong to U.S. service members missing from past military conflicts. In the laboratory, it is possible to control for contamination of remains; however, in the field, it can be difficult to prevent modern DNA from being transferred to skeletal elements and being carried forward through the analysis process. Four such cases are described here along with the controls in place in the laboratory to eliminate the possibility of the exogenous DNA being reported as authentic. In each case, the controls implemented by the laboratories prevented the false reporting of contaminant exogenous DNA from remains that were either faunal or human, but lacked endogenous DNA.
Insights
Contamination is a challenge when identifying missing service members using mitochondrial DNA (mtDNA) from skeletal remains. Laboratory controls effectively prevent reporting of modern contaminant DNA as authentic remains.
Area of Science:
- Forensic Science
- Molecular Biology
- Genetics
Background:
- The Armed Forces DNA Identification Laboratory analyzes over 800 skeletal samples annually for the Joint POW/MIA Accounting Command.
- Analysis focuses on mitochondrial DNA (mtDNA) from degraded skeletal remains of missing U.S. service members.
Observation:
- Field collection of skeletal remains presents challenges in preventing modern DNA contamination.
- Exogenous DNA transfer can occur during sample collection and processing.
Findings:
- Four cases illustrate the potential for contamination in skeletal DNA analysis.
- Laboratory controls successfully identified and eliminated contaminant DNA in these cases.
- Controls prevented the false reporting of exogenous DNA from faunal or human sources lacking endogenous DNA.
Implications:
- Robust laboratory protocols are crucial for accurate identification of remains.
- Effective contamination controls ensure the integrity of forensic DNA identification.
- This work supports the accurate identification of missing service members.
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