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Absence of oncogenic canonical pathway mutations in aggressive pediatric rhabdoid tumors
Mark W Kieran1, Charles W M Roberts, Susan N Chi
1Director, Pediatric Medical Neuro-Oncology, Dana-Farber Cancer Institute and Boston Children's Hospital, Pediatric Hematology/Oncology, Boston, MA 02215, USA. mark_kieran@dfci.harvard.edu
Background:
Rhabdoid tumors (also called atypical teratoid/rhabdoid tumor (AT/RT) in the brain), are highly malignant, poor prognosis lesions arising in the kidneys, soft tissues, and central nervous system. Targeted therapy in this disease would benefit from advanced technologies detecting relevant actionable mutations.
Procedure:
Here we report on the evaluation of 25 tumors, all with known SMARCB1/INI1 alterations, for the presence of 983 different mutations in 115 oncogenes and tumor-suppressor genes using OncoMap, a mass spectrometric method of allele detection.
Results:
Other than mutations in SMARCB1, our results identified a single activating mutation in NRAS and complete absence of oncogenic mutations in all other genes tested.
Conclusion:
The absence of mutations in canonical pathways critical for development and progression of adult cancers suggests that distinct mechanisms drive these highly malignant pediatric tumors. This may limit the therapeutic utility of available targeted therapies and require a refocusing toward developmental and epigenetic pathways.
Insights
Rhabdoid tumors, including atypical teratoid/rhabdoid tumors (AT/RT), show limited actionable mutations beyond SMARCB1. This suggests distinct pediatric tumor mechanisms may require novel therapeutic strategies focusing on developmental and epigenetic pathways.
Area of Science:
- Oncology
- Genetics
- Molecular Biology
Background:
- Rhabdoid tumors (RTs), including atypical teratoid/rhabdoid tumors (AT/RT), are aggressive neoplasms with poor prognosis affecting the central nervous system, kidneys, and soft tissues.
- Effective targeted therapy for RTs necessitates advanced methods for detecting actionable mutations.
Purpose of the Study:
- To comprehensively analyze mutations in oncogenes and tumor-suppressor genes in RTs.
- To identify potential therapeutic targets for these highly malignant pediatric tumors.
Main Methods:
- Utilized OncoMap, a mass spectrometry-based method, to screen 25 RTs with known SMARCB1/INI1 alterations.
- Assessed 983 distinct mutations across 115 key oncogenes and tumor-suppressor genes.
Main Results:
- Confirmed SMARCB1/INI1 alterations as a primary genetic driver.
- Identified a single activating NRAS mutation in one tumor.
- Observed a lack of oncogenic mutations in all other tested genes, including canonical cancer pathways.
Conclusions:
- The genetic landscape of RTs is distinct from adult cancers, characterized by a paucity of mutations in common oncogenic pathways.
- These findings suggest that current targeted therapies may have limited efficacy.
- Future therapeutic strategies should explore developmental and epigenetic pathways for treating these aggressive pediatric tumors.
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