Related Experiment Video
Updated: May 18, 2026

Agarose-Based Model Ecosystem for Cultivating Methanotrophs in a Methane-Oxygen Counter Gradient
Published on: September 6, 2024
Choline and N,N-dimethylethanolamine as direct substrates for methanogens
Andrew J Watkins1, Erwan G Roussel, Gordon Webster
1School of Earth and Ocean Sciences, Cardiff University, Cardiff, United Kingdom.
Certain Methanococcoides archaea can directly use choline for methane production, a process previously thought to require bacterial partners. This finding expands the known metabolic capabilities of methanogens, impacting understanding of anaerobic digestion and methane cycling.
Area of Science:
- Microbiology
- Environmental Science
- Biochemistry
Background:
- Choline (N,N,N-trimethylethanolamine) is abundant in sediments and utilized by mixed prokaryote cultures for methane production.
- Pure cultures of methanogens were previously not known to directly metabolize choline.
Purpose of the Study:
- To investigate the direct utilization of choline for methanogenesis by isolated Methanococcoides strains.
- To identify metabolic intermediates and new growth substrates derived from choline metabolism.
Main Methods:
- Isolation of Methanococcoides strains from diverse marine sediments.
- Cultivation experiments to assess substrate utilization and methanogenesis.
- Use of 2-bromoethanesulfonate (BES) to inhibit methanogenesis.
- Diauxic growth studies with choline and trimethylamine.
Main Results:
- Five Methanococcoides strains directly utilized choline for methanogenesis, producing ethanolamine.
- Dimmethylethanolamine was identified as a new growth substrate, while monomethylethanolamine was not.
- 2-bromoethanesulfonate (BES) inhibited choline-dependent methane production.
- Diauxic growth observed when choline and trimethylamine were supplied, with trimethylamine utilized first.
Conclusions:
- Certain Methanococcoides strains can directly metabolize choline, expanding the known substrate range for methanogens.
- This direct utilization reduces reliance on bacterial syntrophs for substrate supply in anaerobic environments.
- The findings contribute to a better understanding of methane cycling and microbial metabolism in sediments.
Related Concept Videos
Microbes and Methanogenesis
Direct-Acting Cholinergic Agonists: Chemistry and Structure-Activity Relationship
The direct-acting...
Direct-Acting Cholinergic Agonists: Pharmacokinetics
Carboxylic Acids to Methylesters: Alkylation using Diazomethane
Direct-Acting Cholinergic Agonists: Therapeutic Uses
Indirect-Acting Cholinergic Agonists: Mechanism of Action
Reversible inhibitors like edrophonium bind to a specific part of the enzyme called the anionic catalytic site. They form noncovalent bonds, which means they are not strongly attached to the enzyme. This creates a temporary and less stable enzyme–inhibitor complex, leading to...

