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Related Concept Videos

Structure of Lipids03:38

Structure of Lipids

Lipids include a diverse group of compounds that are largely nonpolar in nature. This is because they are hydrocarbons that include mostly nonpolar carbon-carbon or carbon-hydrogen bonds. Non-polar molecules are hydrophobic (“water fearing”), or insoluble in water. Lipids perform many different functions in a cell. Cells store energy for long-term use in the form of fats. Lipids also provide insulation from the environment for plants and animals. For example, they help keep aquatic birds and...
Structure of Lipids03:38

Structure of Lipids

Lipids include a diverse group of compounds that are largely nonpolar in nature. This is because they are hydrocarbons that include mostly nonpolar carbon-carbon or carbon-hydrogen bonds. Non-polar molecules are hydrophobic (“water fearing”), or insoluble in water. Lipids perform many different functions in a cell. Cells store energy for long-term use in the form of fats. Lipids also provide insulation from the environment for plants and animals. For example, they help keep aquatic birds and...
Structure of Lipids03:38

Structure of Lipids

Lipids include a diverse group of compounds that are largely nonpolar in nature. This is because they are hydrocarbons that include mostly nonpolar carbon-carbon or carbon-hydrogen bonds. Non-polar molecules are hydrophobic (“water fearing”), or insoluble in water. Lipids perform many different functions in a cell. Cells store energy for long-term use in the form of fats. Lipids also provide insulation from the environment for plants and animals. For example, they help keep aquatic birds and...
Biosynthesis of Lipids01:29

Biosynthesis of Lipids

Microbial membranes exhibit remarkable diversity in lipid composition, reflecting evolutionary adaptations to various environmental conditions. The three domains of life—Bacteria, Archaea, and Eukarya—synthesize membrane lipids through distinct biosynthetic pathways, leading to fundamental structural differences that impact membrane stability, function, and adaptability.Fatty Acid-Based Lipids in Bacteria and EukaryaBacteria and eukaryotes share a common fatty acid biosynthesis pathway, which...
Lipid-derived Compounds in the Human Body01:31

Lipid-derived Compounds in the Human Body

Fats and lipids are crucial components in the human body. Some lipid-derived compounds, such as fat-soluble vitamins, eicosanoids, lipoproteins, and glycolipids, also play unique roles to support various  biological processes .
Fat-soluble Vitamins
Fat-soluble vitamins, including vitamins A, D, E, and K, are required in minimal quantities, but their deficiencies can lead to severely abnormal physiological conditions. For example, vitamin A deficiency can cause night blindness, dry skin, delayed...
What are Lipids?01:38

What are Lipids?

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Curation of Computational Chemical Libraries Demonstrated with Alpha-Amino Acids
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Template-based combinatorial enumeration of virtual compound libraries for lipids.

Manish Sud1, Eoin Fahy, Shankar Subramaniam

  • 1San Diego Supercomputer Center, University of California San Diego, 9500, Gilman Drive, La Jolla, CA 92032, USA. msud@san.rr.com.

Journal of Cheminformatics
|September 26, 2012
PubMed
Summary
This summary is machine-generated.

LipidMapsTools software enables consistent 2D structure generation for virtual lipid libraries. This open-source package provides a standardized method for enumerating lipid compounds, improving data representation.

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Area of Science:

  • Computational chemistry
  • Bioinformatics
  • Lipidomics

Background:

  • Existing software for virtual library enumeration lacks control over 2D structure layout.
  • Inconsistent 2D representations hinder standardization in computational chemistry and lipidomics.

Purpose of the Study:

  • To develop a software package, LipidMapsTools, for template-based combinatorial enumeration of virtual lipid compound libraries.
  • To ensure consistent and standardized 2D structure representation for enumerated lipids.

Main Methods:

  • LipidMapsTools utilizes pre-defined lipid templates and chain abbreviations for enumeration.
  • The software adheres to the LIPID MAPS consortium's framework for lipid structure representation.
  • Enumeration is template-based, differing from scaffold-and-R-group methods.

Main Results:

  • LipidMapsTools generates virtual lipid libraries with consistent 2D structures.
  • The software is lightweight, fast, and has no external dependencies.
  • It provides a standardized approach to virtual lipid library creation.

Conclusions:

  • LipidMapsTools offers a novel solution for controlled 2D layout in virtual lipid library enumeration.
  • The open-source package promotes standardization and accessibility in lipid research.
  • This tool facilitates consistent data representation in lipidomics and computational drug discovery.