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Systems-pharmacology dissection of a drug synergy in imatinib-resistant CML
Georg E Winter1, Uwe Rix1, Scott M Carlson2
1CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria.
Abstract:
Occurrence of the BCR-ABL(T315I) gatekeeper mutation is among the most pressing challenges in the therapy of chronic myeloid leukemia (CML). Several BCR-ABL inhibitors have multiple targets and pleiotropic effects that could be exploited for their synergistic potential. Testing combinations of such kinase inhibitors identified a strong synergy between danusertib and bosutinib that exclusively affected CML cells harboring BCR-ABL(T315I). To elucidate the underlying mechanisms, we applied a systems-level approach comprising phosphoproteomics, transcriptomics and chemical proteomics. Data integration revealed that both compounds targeted Mapk pathways downstream of BCR-ABL, resulting in impaired activity of c-Myc. Using pharmacological validation, we assessed that the relative contributions of danusertib and bosutinib could be mimicked individually by Mapk inhibitors and collectively by downregulation of c-Myc through Brd4 inhibition. Thus, integration of genome- and proteome-wide technologies enabled the elucidation of the mechanism by which a new drug synergy targets the dependency of BCR-ABL(T315I) CML cells on c-Myc through nonobvious off targets.
Insights
A new drug combination of danusertib and bosutinib shows synergy against chronic myeloid leukemia (CML) with the T315I mutation. This therapy targets the c-Myc pathway, offering a novel approach for resistant CML cases.
Area of Science:
- Oncology
- Molecular Biology
- Pharmacology
Background:
- The T315I gatekeeper mutation in BCR-ABL presents a significant challenge in treating chronic myeloid leukemia (CML).
- Existing BCR-ABL inhibitors possess multiple targets, suggesting potential for synergistic therapeutic strategies.
Purpose of the Study:
- To identify and elucidate the mechanism of synergistic drug combinations targeting BCR-ABL(T315I)-mutated CML cells.
- To investigate the underlying molecular pathways affected by the synergistic drug combination.
Main Methods:
- Systems-level analysis including phosphoproteomics, transcriptomics, and chemical proteomics.
- Pharmacological validation of identified pathways and targets.
- Testing drug combinations for synergistic effects on CML cells harboring the BCR-ABL(T315I) mutation.
Main Results:
- A potent synergy was observed between danusertib and bosutinib, specifically in CML cells with the BCR-ABL(T315I) mutation.
- Both drugs were found to target MAPK pathways downstream of BCR-ABL, leading to reduced c-Myc activity.
- Pharmacological inhibition of MAPK pathways or Brd4 (which downregulates c-Myc) mimicked the effects of the drug combination.
Conclusions:
- The combination of danusertib and bosutinib demonstrates a novel synergistic mechanism against BCR-ABL(T315I) CML.
- This synergy is mediated by targeting the dependency of these CML cells on c-Myc through non-obvious off-target effects.
- Systems-level data integration is crucial for uncovering complex drug interactions and therapeutic vulnerabilities.
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