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Related Experiment Video

Updated: May 18, 2026

From a Natural Product to Its Biosynthetic Gene Cluster: A Demonstration Using Polyketomycin from Streptomyces diastatochromogenes T&#252;6028
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Gene cluster encoding cholate catabolism in Rhodococcus spp.

William W Mohn1, Maarten H Wilbrink, Israël Casabon

  • 1Department of Microbiology and Immunology, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada. wmohn@mail.ubc.ca

Journal of Bacteriology
|October 2, 2012
PubMed
Summary

Rhodococcus jostii bacteria utilize a specific gene cluster to break down bile acids like cholate, essential for gut ecology and carbon cycling. This pathway is distinct from cholesterol breakdown.

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Area of Science:

  • Microbiology
  • Biochemistry
  • Environmental Science

Background:

  • Bile acids are crucial steroids in vertebrate digestion.
  • Bacterial bile acid catabolism impacts the carbon cycle and gut ecology.
  • Potential commercial applications exist for bile acid degradation pathways.

Purpose of the Study:

  • To identify and characterize the genetic basis for cholate catabolism in Rhodococcus jostii RHA1.
  • To investigate the enzymes and genes involved in bile acid degradation.
  • To differentiate cholate catabolism from cholesterol catabolism pathways.

Main Methods:

  • Transcriptomic analysis of RHA1 grown on cholate.
  • Gene deletion studies to assess essentiality for growth.
  • Heterologous expression and biochemical characterization of key enzymes (CoA synthetases).
  • Comparative genomics to identify orthologous gene clusters.

Main Results:

  • A distinct gene cluster upregulated on cholate was identified in R. jostii RHA1.
  • kshA3, encoding a 3-ketosteroid-9α-hydroxylase, is essential for cholate growth.
  • CasG initiates cholate degradation by forming cholyl-CoA, and CasI processes intermediates.
  • Orthologous gene clusters are present in other Rhodococcus species and Thermomonospora curvata.
  • Bacteria lacking the cluster cannot grow on cholate, confirming its role.

Conclusions:

  • The identified gene cluster specifically encodes cholate catabolism in Rhodococcus.
  • This pathway is evolutionarily conserved within Rhodococcus and related bacteria.
  • The findings distinguish cholate catabolism from the well-known cholesterol catabolism pathway.