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Histone Modification02:32

Histone Modification

The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Histone Modification02:32

Histone Modification

The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Chromatin Modification in iPS Cells01:32

Chromatin Modification in iPS Cells

Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
Heterochromatin02:38

Heterochromatin

The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions that take up more dye are called heterochromatin. Heterochromatin is further classified into two forms – constitutive heterochromatin and facultative heterochromatin.
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at 9th...
Inheritance of Chromatin Structures03:17

Inheritance of Chromatin Structures

Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying DNA...
Euchromatin01:01

Euchromatin

The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions take up more dye, appearing darker, while the less-compact areas take up less dye and appear lighter. Based on the compaction level, chromatins are classified into two primary forms – euchromatin and heterochromatin.
Euchromatin is the less dense region of the chromatin and stains lighter. Euchromatin contains histone H3 extensively...

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Related Experiment Video

Updated: May 18, 2026

Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers
10:28

Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers

Published on: September 20, 2018

Histone modification-mediated Lhx2 gene expression.

Key Sun Park1, Kee Kwang Kim, Kyoon Eon Kim

  • 1Department of Biochemistry, Chungnam National University, Daejeon 305-764, Republic of Korea.

Biochemical and Biophysical Research Communications
|October 6, 2012
PubMed
Summary
This summary is machine-generated.

This study reveals how the Lhx2 gene is regulated. We found a specific DNA region that responds to HDAC3 inhibition and E2F1 stimulation, involving histone modifications.

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Isolation and Cultivation of Neural Progenitors Followed by Chromatin-Immunoprecipitation of Histone 3 Lysine 79 Dimethylation Mark
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Isolation and Cultivation of Neural Progenitors Followed by Chromatin-Immunoprecipitation of Histone 3 Lysine 79 Dimethylation Mark

Published on: January 26, 2018

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Last Updated: May 18, 2026

Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers
10:28

Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers

Published on: September 20, 2018

Isolation and Cultivation of Neural Progenitors Followed by Chromatin-Immunoprecipitation of Histone 3 Lysine 79 Dimethylation Mark
10:09

Isolation and Cultivation of Neural Progenitors Followed by Chromatin-Immunoprecipitation of Histone 3 Lysine 79 Dimethylation Mark

Published on: January 26, 2018

Area of Science:

  • Molecular Biology
  • Developmental Biology
  • Gene Regulation

Background:

  • The LIM homeobox transcription factor Lhx2 is crucial for central nervous system and embryonic tissue development.
  • The precise molecular mechanisms governing Lhx2 gene expression are not well understood.

Purpose of the Study:

  • To identify and characterize regulatory elements controlling Lhx2 gene expression.
  • To investigate the roles of histone deacetylase inhibition and E2F1 in Lhx2 regulation.

Main Methods:

  • Promoter analysis to identify key regulatory regions.
  • Investigation of gene activation by trichostatin A (TSA) and E2F1.
  • Assessment of E2F1 binding and histone acetylation in Lhx2 regulation.

Main Results:

  • A specific promoter region (-229 to -126) is essential for basal Lhx2 expression and activation by TSA.
  • Transcription factor E2F1 directly binds to this -229 to -126 region, activating Lhx2 expression.
  • E2F1 is required for TSA-mediated Lhx2 activation, and histone 3 acetylation is involved.

Conclusions:

  • Histone modification and E2F1 binding are critical components of Lhx2 gene expression regulation.
  • This study elucidates a novel regulatory pathway for Lhx2 involving epigenetic mechanisms and transcription factor interplay.