Related Experiment Video
Updated: May 17, 2026

Multi-Gene Single Nucleotide Polymorphism Detection in Gastric Cancer Based on Ion Semiconductor Sequencing Platform
Published on: May 10, 2024
A high frequency of MSH6 G268A polymorphism and survival association in glioblastoma
Chunying Pei1, Hui Chen, Xiuzhi Jia
1Department of Immunology, Harbin Medical University, Harbin, China.
Abstract:
MSH6 (mutS homolog 6), one of the five key mismatch repair (MMR) genes, was found to play an important role in conferring resistance to alkylating agents-temozolomide (TMZ) in malignant glioma. This study aims to investigate whether genetic variations in MSH6 gene are associated with the survival outcomes in patients with malignant glioma. Each exon of the MSH6 gene was sequenced, and single nucleotide polymorphism (SNP) analysis was performed using 74 tumor tissues from glioblastoma multiforme (GBM) patients. Among these patients, 54 patients received radiotherapy plus TMZ treatment; 20 patients had radiotherapy only. The promoter methylation of O6-methylguanine methyltransferase (MGMT) was measured by methylation-specific polymerase chain reaction. Literature mining and related data collection were done with NCBI and PubMed databases. Of the 74 GBM patients, 50% (n = 37) harbored MSH6 G268A polymorphism, and no significant rates of other SNP or gene mutation across MSH6 exons were detected. The median overall survival (OS) was 15.6 months for who harbored the SNP and 12.6 months for SNP-negative patients (log-rank test: p = .324). The median OS for the MGMT promoter methylation group (n = 25) and nonmethylation group (n = 29) of the 54 GBM patients treated with TMZ was 21.3 and 8.9 months, respectively, (p = .002). In conclusion, we identified a high frequency of MSH6 G268A polymorphism in MSH6 gene, which did not have a notable influence on survival for the malignant glioma patients with/without TMZ treatment.
Insights
Genetic variations in the MSH6 gene, specifically the G268A polymorphism, were common in glioblastoma multiforme patients but did not significantly impact survival outcomes, even with temozolomide treatment.
Area of Science:
- Oncology
- Genetics
- Molecular Biology
Background:
- The MSH6 gene is crucial for DNA mismatch repair and influences resistance to temozolomide (TMZ) in malignant glioma.
- Understanding genetic variations in MSH6 is important for predicting patient survival outcomes.
Purpose of the Study:
- To investigate the association between genetic variations in the MSH6 gene and survival in patients with malignant glioma.
- To determine if MSH6 polymorphisms affect outcomes in glioblastoma multiforme (GBM) patients treated with radiotherapy and/or TMZ.
Main Methods:
- Sequencing of MSH6 exons and single nucleotide polymorphism (SNP) analysis in 74 GBM tumor tissues.
- Assessment of O6-methylguanine methyltransferase (MGMT) promoter methylation using methylation-specific PCR.
- Literature mining using NCBI and PubMed databases for related data collection.
Main Results:
- A high frequency (50%) of MSH6 G268A polymorphism was observed in GBM patients; no other significant SNPs or mutations were detected.
- The MSH6 G268A polymorphism did not show a significant association with overall survival (OS) (p = .324).
- MGMT promoter methylation was significantly associated with improved OS in patients treated with TMZ (21.3 months vs. 8.9 months, p = .002).
Conclusions:
- The MSH6 G268A polymorphism is frequent in GBM but does not appear to influence patient survival.
- MGMT promoter methylation is a significant prognostic factor for survival in GBM patients receiving TMZ treatment.

