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Microbial Mats

Microbial communities forming biofilms and mats represent complex, spatially structured ecosystems where metabolic processes are stratified according to light, oxygen, and nutrient gradients. Biofilms are initial colonization stages, only a few millimeters thick, while mature microbial mats can reach centimeter-scale thickness and display intricate vertical organization. Their structural and functional heterogeneity allows microorganisms to occupy distinct ecological niches within a few...
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Freshwater Microbial Ecology01:24

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Freshwater systems such as streams, rivers, and lakes exhibit distinct physical and biological characteristics that influence their microbial communities. These environments are broadly categorized into lotic systems—those with flowing waters like streams and most rivers—and lentic systems, which include still or slow-moving waters such as lakes, ponds, and marshes.In lentic systems, phytoplankton drive primary production, generating autochthonous organic carbon. In contrast, lotic systems...
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Updated: May 17, 2026

Extraction of Structural Extracellular Polymeric Substances from Aerobic Granular Sludge
06:10

Extraction of Structural Extracellular Polymeric Substances from Aerobic Granular Sludge

Published on: September 26, 2016

Microbial diversity differences within aerobic granular sludge and activated sludge flocs.

M-K H Winkler1, R Kleerebezem, L M M de Bruin

  • 1Department of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC Delft, The Netherlands. m.k.h.winkler@tudelft.nl

Applied Microbiology and Biotechnology
|October 16, 2012
PubMed
Summary

Aerobic granular sludge and activated sludge show distinct microbial communities but similar overall bacterial function. Aerobic granular sludge experienced a permanent shift in microbial populations, unlike activated sludge.

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A Novel Bioreactor for High Density Cultivation of Diverse Microbial Communities
08:13

A Novel Bioreactor for High Density Cultivation of Diverse Microbial Communities

Published on: December 25, 2015

Area of Science:

  • Environmental microbiology
  • Wastewater treatment technologies

Background:

  • Microbial community structure and function are critical for efficient wastewater treatment.
  • Aerobic granular sludge (AGS) and activated sludge (AS) are two distinct wastewater treatment systems.

Purpose of the Study:

  • To compare microbial community variations between AGS and AS systems over 400 days.
  • To investigate the stability and dynamics of bacterial populations and ammonium-oxidizing bacteria (AOB) in both systems.
  • To correlate microbial community shifts with operational parameters like temperature.

Main Methods:

  • 16S DNA gene Denaturing Gradient Gel Electrophoresis (DGGE) for microbial community analysis.
  • Similarity, multi-dimensional scaling (MDS), and correlation analyses.
  • Monitoring of wastewater treatment plant operational data.

Main Results:

  • Total bacterial communities in AGS and AS were dissimilar but showed comparable species richness, entropy, and evenness.
  • MDS analysis indicated stable microbial populations in AS, while AGS showed a permanent shift.
  • Ammonium-oxidizing bacteria (AOB) communities were less even than general bacterial communities, with different dominant genera (Nitrosomonas in AS, Nitrosomonas and Nitrosospira equally in AGS).
  • Microbial diversity shifts in AOB correlated with temperature fluctuations.

Conclusions:

  • Wastewater treatment systems can harbor functionally similar yet compositionally distinct microbial communities.
  • AGS systems may promote more dynamic and permanently altered microbial populations compared to AS.
  • Temperature significantly influences the diversity of ammonium-oxidizing bacteria in wastewater treatment systems.