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Updated: May 17, 2026

Structural Studies of Macromolecules in Solution using Small Angle X-Ray Scattering
Published on: November 5, 2018
Maximum-entropy-method charge densities based on structure-factor extraction with the commonly used Rietveld
Niels Bindzus1, Bo Brummerstedt Iversen
1Center for Materials Crystallography, Department of Chemistry and iNANO, Aarhus University, Aarhus C, Denmark.
Comparing Rietveld refinement programs revealed significant variations in electron-density distribution (EDD) calculations. Differences in structure factor uncertainties impact the accuracy of maximum entropy method (MEM) EDDs, necessitating an optimized approach.
Area of Science:
- Crystallography
- Materials Science
- Computational Chemistry
Background:
- Rietveld refinement is crucial for analyzing crystal structures from diffraction data.
- Electron-density distributions (EDDs) provide insights into chemical bonding and material properties.
- Maximum Entropy Method (MEM) is a common technique for calculating EDDs from structure factors.
Purpose of the Study:
- To evaluate structure-factor extraction from common Rietveld programs (FullProf, Jana2006, GSAS).
- To assess the impact of these extractions on subsequent Maximum Entropy Method (MEM) electron-density distribution (EDD) calculations.
- To investigate a potential new approach for optimizing MEM EDDs.
Main Methods:
- Collected synchrotron powder X-ray diffraction data for NaGaH(4) at 90 K.
- Collected neutron powder diffraction data on the deuterated NaGaD(4) sample.
- Extracted structure factors (F(obs)) using FullProf, Jana2006, and GSAS, analyzing background and peak-shape models.
- Calculated EDDs using MEM and analyzed results within the quantum theory of atoms in molecules.
Main Results:
- Observed structure factors (F(obs)) were corrected for anomalous dispersion and scaled.
- Significant differences were found in the estimated standard deviations (σ(obs)) generated by different Rietveld programs.
- These variations in σ(obs) led to substantial differences in the resulting MEM EDDs.
Conclusions:
- The choice of Rietveld refinement program and its associated parameters significantly influences the accuracy of MEM EDDs.
- Estimated standard deviations (σ(obs)) are critical for reliable MEM EDD calculations.
- A novel method is proposed to select an optimized MEM EDD, mitigating variations caused by σ(obs) differences.
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