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Published on: August 29, 2025
Thirty-years of screening for cystic fibrosis in East Anglia
Jacqui Calvin1, Sarah L Hogg, Donna McShane
1Biochemical Genetics Unit, Cambridge University Hospitals NHS Foundation Trust, Hills Road, Cambridge, UK. jacqui.calvin@addenbrookes.nhs.uk
Insights
Newborn screening for cystic fibrosis (CF) using IRT-DNA-IRT protocols significantly improved positive predictive value compared to IRT-IRT alone. This enhanced screening detects 95% of CF cases presenting before age three.
Area of Science:
- Medical screening
- Pediatric diagnostics
- Genetic testing
Background:
- Newborn screening for cystic fibrosis (CF) traditionally uses immunoreactive trypsinogen (IRT) levels.
- The Norfolk, Suffolk, and Cambridgeshire program evolved from an IRT-IRT protocol to an IRT-DNA-IRT protocol incorporating mutation analysis.
Purpose of the Study:
- To evaluate the long-term effectiveness and diagnostic yield of two newborn screening protocols for cystic fibrosis.
- To assess the impact of incorporating DNA analysis on the positive predictive value of CF screening.
Main Methods:
- Analysis of screening data from 730,730 newborns over 30 years.
- Comparison of the IRT-IRT protocol with the IRT-DNA-IRT protocol, including mutation analysis.
- Evaluation of false negative rates and positive predictive values (PPV) for both protocols.
Main Results:
- The IRT-DNA-IRT protocol demonstrated a significantly improved PPV (85.9%) compared to the IRT-IRT protocol (67.3%), excluding meconium ileus cases.
- PPVs were higher for well, term infants (82.2% for IRT-IRT, 98.2% for IRT-DNA-IRT).
- 296 screen-positive CF cases and 29 false negatives were identified; 10 false negatives had meconium ileus.
Conclusions:
- Newborn screening for CF is a valid strategy, detecting 95% of unsuspected cases presenting before age three.
- The inclusion of DNA analysis in second-tier testing is the primary factor for the improved PPV.
- Long-term outcome data collection is crucial for accurate assessment of screening program performance.
Background:
Newborn screening for cystic fibrosis (CF) relies on the measurement of immunoreactive trypsinogen (IRT) originating from the pancreas. The Norfolk, Suffolk and Cambridgeshire screening programme initially exploited the persistent increase in IRT seen in CF (IRT-IRT protocol) and later changed to include mutation analysis as a second tier test (IRT-DNA-IRT protocol).
Results:
During a 30 year period 582 966 babies have been screened by IRT-IRT and 147 764 by IRT-DNA-IRT (total 730730), resulting in 296 screen positive cases of CF and 29 false negatives (including 10 false negatives with meconium ileus). Ten missed CF cases were pancreatic insufficient, however all were diagnosed before their first birthday, suggesting that a false negative result did not forestall appropriate clinical investigation. The IRT-DNA-IRT protocol had a much improved positive predictive value (PPV) of 85.9% compared to 67.3% for IRT-IRT, excluding CF babies with meconium ileus. The PPVs increased to 82.2% and 98.2% respectively if only well, term babies were considered. The main factor to account for this improvement in PPV has probably been the incorporation of DNA analysis in the second tier testing.
Conclusions:
The diagnosis of screen-positive babies proved difficult in a minority of cases with the classification of some patients changing with evolving phenotype. Our results illustrate the importance of collecting outcome data over a long time period for accurate assessment of the screening programme. This study provides evidence that newborn screening for CF is a valid undertaking that detects 95% of unsuspected CF cases presenting before 3 years of age.
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