Targeting of several glycolytic enzymes using RNA interference reveals aldolase affects cancer cell proliferation through a non-glycolytic mechanism
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Updated: May 17, 2026

Application of AlDeSense to Stratify Ovarian Cancer Cells Based on Aldehyde Dehydrogenase 1A1 Activity
Published on: March 31, 2023
Carolyn Ritterson Lew1, Dean R Tolan
1Department of Biology, Boston University, Boston, Massachusetts 02215, USA.
Abstract:
In cancer, glucose uptake and glycolysis are increased regardless of the oxygen concentration in the cell, a phenomenon known as the Warburg effect. Several (but not all) glycolytic enzymes have been investigated as potential therapeutic targets for cancer treatment using RNAi. Here, four previously untargeted glycolytic enzymes, aldolase A, glyceraldehyde 3-phosphate dehydrogenase, triose phosphate isomerase, and enolase 1, are targeted using RNAi in Ras-transformed NIH-3T3 cells. Of these enzymes, knockdown of aldolase causes the greatest effect, inhibiting cell proliferation by 90%. This defect is rescued by expression of exogenous aldolase. However, aldolase knockdown does not affect glycolytic flux or intracellular ATP concentration, indicating a non-metabolic cause for the cell proliferation defect. Furthermore, this defect could be rescued with an enzymatically dead aldolase variant that retains the known F-actin binding ability of aldolase. One possible model for how aldolase knockdown may inhibit transformed cell proliferation is through its disruption of actin-cytoskeleton dynamics in cell division. Consistent with this hypothesis, aldolase knockdown cells show increased multinucleation. These results are compared with other studies targeting glycolytic enzymes with RNAi in the context of cancer cell proliferation and suggest that aldolase may be a useful target in the treatment of cancer.
Insights
Targeting aldolase, a glycolytic enzyme, via RNA interference significantly inhibits cancer cell proliferation. This effect is linked to aldolase
Area of Science:
- Oncology
- Molecular Biology
- Biochemistry
Background:
- Cancer cells exhibit increased glucose metabolism via the Warburg effect.
- Glycolytic enzymes are potential therapeutic targets for cancer treatment.
- Specific enzymes like aldolase A, GAPDH, TPI, and enolase 1 were previously untargeted.
Purpose of the Study:
- To investigate the role of four specific glycolytic enzymes in cancer cell proliferation using RNA interference.
- To identify novel therapeutic targets within the glycolytic pathway for cancer treatment.
Main Methods:
- RNA interference (RNAi) was used to knock down four glycolytic enzymes in Ras-transformed NIH-3T3 cells.
- Aldolase knockdown effects on cell proliferation, glycolytic flux, and ATP concentration were assessed.
- Rescue experiments were performed using exogenous aldolase and an enzymatically dead aldolase variant.
Main Results:
- Aldolase knockdown demonstrated the most significant inhibition of cancer cell proliferation (90%).
- The proliferation defect was rescued by expressing functional or F-actin-binding deficient aldolase, suggesting a non-metabolic role.
- Aldolase knockdown disrupted actin-cytoskeleton dynamics, leading to increased multinucleation, indicating a role in cell division.
Conclusions:
- Aldolase plays a crucial role in cancer cell proliferation, potentially through its interaction with the actin cytoskeleton rather than its metabolic function.
- Aldolase represents a promising therapeutic target for cancer treatment.
- Targeting aldolase may offer a novel strategy to inhibit cancer growth by disrupting cell division processes.
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