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Pharmacophore-based drug design and biological evaluation of novel ABCB1 inhibitors
Sheng-lie Zhang1, Yin-xiang Wei, Qian Li
1School of Pharmacy, China Pharmaceutical University, Nanjing 210009, China.
Abstract:
Overexpression of ABCB1 is one of major barriers for multidrug resistance in chemotherapy and limits drug oral bioavailability. Inhibition of ABCB1 would sensitize multidrug resistance in clinical cancer chemotherapy. With this aim, a 3D pharmacophore model was created based on known ABCB1 inhibitors with correlation coefficient of 0.94, comprising three hydrophobic features and one hydrogen bond acceptor. It was further validated and used to search our in-house 3D database for potential ABCB1 inhibitors. The inhibitory activities of the best hits were evaluated by several biological assays, such as rhodamine 123 accumulation assay, chemosensitization assay, multidrug resistance 1-Madin-Darby canine kidney cells/Madin-Darby canine kidney cells permeability assay. Finally, compounds YZ-3 and YZ-16 were identified as potential leads to be developed in the designing of novel potent ABCB1 inhibitors.
Insights
Overexpression of the ABCB1 transporter causes multidrug resistance in cancer chemotherapy. This study developed a pharmacophore model to identify novel ABCB1 inhibitors, leading to the discovery of potential lead compounds YZ-3 and YZ-16.
Area of Science:
- Medicinal Chemistry
- Pharmacology
- Drug Discovery
Background:
- Overexpression of ABCB1 (P-glycoprotein) is a significant obstacle in cancer chemotherapy, contributing to multidrug resistance and limiting oral drug bioavailability.
- Inhibiting ABCB1 activity is a key strategy to overcome chemoresistance and improve the efficacy of cancer treatments.
Purpose of the Study:
- To develop a 3D pharmacophore model for ABCB1 inhibitors.
- To identify novel potent ABCB1 inhibitors through database screening.
- To validate the inhibitory activity of identified compounds using biological assays.
Main Methods:
- Construction and validation of a 3D pharmacophore model based on known ABCB1 inhibitors.
- Virtual screening of an in-house 3D database using the developed pharmacophore model.
- In vitro evaluation of identified hit compounds using rhodamine 123 accumulation, chemosensitization, and cell permeability assays.
Main Results:
- A validated 3D pharmacophore model was generated, comprising three hydrophobic features and one hydrogen bond acceptor.
- Virtual screening identified several potential ABCB1 inhibitors from the in-house database.
- Compounds YZ-3 and YZ-16 demonstrated significant inhibitory activity in biological assays, showing potential as lead compounds.
Conclusions:
- The developed 3D pharmacophore model is effective for identifying novel ABCB1 inhibitors.
- Compounds YZ-3 and YZ-16 represent promising lead candidates for the development of new drugs to combat multidrug resistance in cancer therapy.
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