Related Experiment Video
Updated: May 17, 2026

From Molecules to Materials: Engineering New Ionic Liquid Crystals Through Halogen Bonding
Published on: March 24, 2018
Experimental and theoretical characterization of a lone pair-π complex: water-hexafluorobenzene
Jay C Amicangelo1, Daniel G Irwin, Cynthia J Lee
1School of Science, Penn State Erie, The Behrend College, 4205 College Drive, Erie, Pennsylvania 16563-0203, USA. jca11@psu.edu
Abstract:
The lone pair-π interaction between H(2)O and C(6)F(6) was studied using matrix isolation infrared spectroscopy and quantum chemical calculations. Co-deposition of H(2)O with C(6)F(6) in a nitrogen matrix at 17 K followed by annealing to 30 K, results in the appearance of multiple new peaks in the infrared spectrum that are shifted from the H(2)O and C(6)F(6) parent absorptions. These peaks only appear when both the H(2)O and C(6)F(6) are present and have been assigned to distinct structures of a 1:1 H(2)O·C(6)F(6) complex. Similar experiments were performed with D(2)O and HDO and the corresponding infrared peaks for the structures of the D(2)O·C(6)F(6) and HDO·C(6)F(6) complexes have also been observed. Theoretical calculations were performed for the H(2)O·C(6)F(6) complex using the B3LYP, MP2, and CCSD(T) methods. Geometry optimizations at the B3LYP/aug-cc-pVTZ and MP2/aug-cc-pVDZ levels of theory located three structural minima, all of which involve the lone pair-π interaction between the H(2)O and the C(6)F(6) ring, but with different relative orientations of the H(2)O and C(6)F(6) subunits. BSSE corrected interaction energies were estimated at the CCSD(T)/aug-cc-pVTZ level and found to be between -11.2 and -12.3 kJ/mol for the three H(2)O·C(6)F(6) structures. Vibrational frequencies for the each of the structures were calculated at the B3LYP/aug-cc-pVTZ and MP2/aug-cc-pVDZ levels. The frequencies calculated with both methods support the assignments of the observed new peaks in the infrared spectra to the structures of the H(2)O·C(6)F(6) complex; however, the B3LYP calculated frequency shifts were found to be in better quantitative agreement with the experimentally observed frequency shifts.
Related Concept Videos
VSEPR Theory and the Effect of Lone Pairs
Structure of Benzene: Molecular Orbital Model
Hybridization of Atomic Orbitals I
VSEPR Theory
π Molecular Orbitals of 1,3-Butadiene
The simplest conjugated diene is 1,3-butadiene: a four-carbon system where each carbon is sp2-hybridized and has an unhybridized p orbital that contains an unpaired electron. According to molecular orbital theory, atomic orbitals combine to form molecular orbitals such that the number...
Hybridization of Atomic Orbitals II

