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Updated: May 17, 2026

Using RNA-sequencing to Detect Novel Splice Variants Related to Drug Resistance in In Vitro Cancer Models
Published on: December 9, 2016
Androgen receptor splice variants mediate enzalutamide resistance in castration-resistant prostate cancer cell lines
Yingming Li1, Siu Chiu Chan, Lucas J Brand
1Masonic Cancer Center, University of Minnesota, 420 Delaware Street SE, Minneapolis, MN 55455, USA.
Abstract:
Persistent androgen receptor (AR) transcriptional activity underlies resistance to AR-targeted therapy and progression to lethal castration-resistant prostate cancer (CRPC). Recent success in retargeting persistent AR activity with next generation androgen/AR axis inhibitors such as enzalutamide (MDV3100) has validated AR as a master regulator during all stages of disease progression. However, resistance to next generation AR inhibitors limits therapeutic efficacy for many patients. One emerging mechanism of CRPC progression is AR gene rearrangement, promoting synthesis of constitutively active truncated AR splice variants (AR-V) that lack the AR ligand-binding domain. In this study, we show that cells with AR gene rearrangements expressing both full-length and AR-Vs are androgen independent and enzalutamide resistant. However, selective knock-down of AR-V expression inhibited androgen-independent growth and restored responsiveness to androgens and antiandrogens. In heterogeneous cell populations, AR gene rearrangements marked individual AR-V-dependent cells that were resistant to enzalutamide. Gene expression profiling following knock-down of full-length AR or AR-Vs showed that AR-Vs drive resistance to AR-targeted therapy by functioning as constitutive and independent effectors of the androgen/AR transcriptional program. Further, mitotic genes deemed previously to be unique AR-V targets were found to be biphasic targets associated with a proliferative level of signaling output from either AR-Vs or androgen-stimulated AR. Overall, these studies highlight AR-Vs as key mediators of persistent AR signaling and resistance to the current arsenal of conventional and next generation AR-directed therapies, advancing the concept of AR-Vs as therapeutic targets in advanced disease.
Insights
Androgen receptor variants (AR-Vs) drive resistance to prostate cancer therapies. Targeting AR-Vs may overcome resistance to current and next-generation treatments for advanced castration-resistant prostate cancer (CRPC).
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Persistent androgen receptor (AR) activity drives castration-resistant prostate cancer (CRPC) progression.
- Next-generation AR inhibitors like enzalutamide show efficacy but resistance remains a challenge.
- AR gene rearrangement leading to AR splice variants (AR-Vs) is an emerging mechanism of resistance.
Purpose of the Study:
- Investigate the role of AR gene rearrangements and AR-Vs in enzalutamide resistance.
- Determine if AR-Vs are independent drivers of AR signaling and therapy resistance.
- Evaluate AR-Vs as potential therapeutic targets in advanced prostate cancer.
Main Methods:
- Studied cells with AR gene rearrangements expressing full-length AR and AR-Vs.
- Utilized selective knock-down of AR-V expression.
- Performed gene expression profiling after AR or AR-V knock-down.
- Analyzed AR-V-dependent cells in heterogeneous populations.
Main Results:
- Cells with AR gene rearrangements were androgen-independent and enzalutamide-resistant.
- Selective AR-V knock-down inhibited growth and restored sensitivity to antiandrogens.
- AR-Vs function as constitutive effectors of the AR transcriptional program, driving resistance.
- Mitotic gene targets are associated with signaling output from AR-Vs or androgen-stimulated AR.
Conclusions:
- AR-Vs are key mediators of persistent AR signaling and resistance to AR-targeted therapies.
- AR-Vs represent promising therapeutic targets for advanced prostate cancer.
- Targeting AR-Vs could overcome resistance to current and future AR-directed treatments.
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