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Trapping of PARP1 and PARP2 by Clinical PARP Inhibitors
Junko Murai1, Shar-yin N Huang, Benu Brata Das
1Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892-4255, USA.
Abstract:
Small-molecule inhibitors of PARP are thought to mediate their antitumor effects as catalytic inhibitors that block repair of DNA single-strand breaks (SSB). However, the mechanism of action of PARP inhibitors with regard to their effects in cancer cells is not fully understood. In this study, we show that PARP inhibitors trap the PARP1 and PARP2 enzymes at damaged DNA. Trapped PARP-DNA complexes were more cytotoxic than unrepaired SSBs caused by PARP inactivation, arguing that PARP inhibitors act in part as poisons that trap PARP enzyme on DNA. Moreover, the potency in trapping PARP differed markedly among inhibitors with niraparib (MK-4827) > olaparib (AZD-2281) >> veliparib (ABT-888), a pattern not correlated with the catalytic inhibitory properties for each drug. We also analyzed repair pathways for PARP-DNA complexes using 30 genetically altered avian DT40 cell lines with preestablished deletions in specific DNA repair genes. This analysis revealed that, in addition to homologous recombination, postreplication repair, the Fanconi anemia pathway, polymerase β, and FEN1 are critical for repairing trapped PARP-DNA complexes. In summary, our study provides a new mechanistic foundation for the rational application of PARP inhibitors in cancer therapy.
Insights
PARP inhibitors trap PARP enzymes on DNA, acting as poisons rather than just catalytic inhibitors. This trapping mechanism is crucial for their antitumor effects and differs in potency among various inhibitors.
Area of Science:
- Molecular Biology
- Cancer Research
- Biochemistry
Background:
- Poly (ADP-ribose) polymerase (PARP) inhibitors are used in cancer therapy.
- Their antitumor effects are thought to stem from blocking DNA repair.
- The precise mechanism of action in cancer cells remains unclear.
Purpose of the Study:
- To elucidate the mechanism of action of PARP inhibitors in cancer cells.
- To investigate the role of PARP trapping in the cytotoxicity of these drugs.
- To identify DNA repair pathways involved in resolving PARP-DNA complexes.
Main Methods:
- Utilized genetically altered avian DT40 cell lines with specific DNA repair gene deletions.
- Assessed the cytotoxic effects of PARP inhibitors.
- Analyzed the formation and repair of PARP-DNA complexes.
Main Results:
- PARP inhibitors trap PARP1 and PARP2 enzymes at sites of DNA damage.
- Trapped PARP-DNA complexes are more cytotoxic than unrepaired single-strand breaks.
- Inhibitor potency in trapping PARP varied significantly (niraparib > olaparib >> veliparib) and did not correlate with catalytic inhibition.
- Homologous recombination, postreplication repair, Fanconi anemia pathway, polymerase β, and FEN1 are critical for repairing trapped PARP-DNA complexes.
Conclusions:
- PARP inhibitors function partly as "poisons" that trap PARP on DNA, contributing to their antitumor activity.
- The efficacy of PARP inhibitors is influenced by their ability to trap PARP, not solely their catalytic inhibition.
- Understanding the repair pathways for PARP-DNA complexes is essential for optimizing PARP inhibitor therapy in cancer treatment.
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