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Updated: May 17, 2026

Monitoring Cell-autonomous Circadian Clock Rhythms of Gene Expression Using Luciferase Bioluminescence Reporters
Published on: September 27, 2012
Circadian activation of the mitogen-activated protein kinase MAK-1 facilitates rhythms in clock-controlled genes in
Lindsay D Bennett1, Phillip Beremand, Terry L Thomas
1Department of Biology, Texas A&M University, College Station, Texas, USA.
Abstract:
The circadian clock regulates the expression of many genes involved in a wide range of biological functions through output pathways such as mitogen-activated protein kinase (MAPK) pathways. We demonstrate here that the clock regulates the phosphorylation, and thus activation, of the MAPKs MAK-1 and MAK-2 in the filamentous fungus Neurospora crassa. In this study, we identified genetic targets of the MAK-1 pathway, which is homologous to the cell wall integrity pathway in Saccharomyces cerevisiae and the extracellular signal-regulated kinase 1/2 (ERK1/2) pathway in mammals. When MAK-1 was deleted from Neurospora cells, vegetative growth was reduced and the transcript levels for over 500 genes were affected, with significant enrichment for genes involved in protein synthesis, biogenesis of cellular components, metabolism, energy production, and transcription. Additionally, of the ~500 genes affected by the disruption of MAK-1, more than 25% were previously identified as putative clock-controlled genes. We show that MAK-1 is necessary for robust rhythms of two morning-specific genes, i.e., ccg-1 and the mitochondrial phosphate carrier protein gene NCU07465. Additionally, we show clock regulation of a predicted chitin synthase gene, NCU04352, whose rhythmic accumulation is also dependent upon MAK-1. Together, these data establish a role for the MAK-1 pathway as an output pathway of the circadian clock and suggest a link between rhythmic MAK-1 activity and circadian control of cellular growth.
Insights
The circadian clock controls cell growth by regulating mitogen-activated protein kinase (MAPK) pathways. This study shows the MAK-1 pathway is crucial for circadian clock output and influences hundreds of genes involved in essential cellular functions.
Area of Science:
- Molecular Biology
- Genetics
- Mycology
Background:
- The circadian clock orchestrates daily rhythms in gene expression, impacting diverse biological processes.
- Mitogen-activated protein kinase (MAPK) pathways are key signaling cascades involved in cellular regulation.
Purpose of the Study:
- To investigate the role of the MAK-1 MAPK pathway as an output of the circadian clock in Neurospora crassa.
- To identify genetic targets regulated by the MAK-1 pathway and its connection to circadian control.
Main Methods:
- Genetic deletion of MAK-1 in Neurospora crassa.
- Transcriptome analysis to identify affected genes.
- Analysis of gene expression rhythms for clock-controlled genes.
Main Results:
- Deletion of MAK-1 significantly altered the expression of over 500 genes, including those involved in protein synthesis, metabolism, and transcription.
- Over 25% of MAK-1-affected genes were previously identified as clock-controlled.
- MAK-1 is essential for robust circadian rhythms of specific genes, including ccg-1 and NCU04352 (chitin synthase).
Conclusions:
- The MAK-1 pathway functions as a critical output pathway for the circadian clock in Neurospora crassa.
- Rhythmic activity of MAK-1 is linked to the circadian regulation of cellular growth and gene expression.
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M cyclin...

