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Nucleoside Triphosphates - From Synthesis to Biochemical Characterization
Published on: April 3, 2014
O,O'-Dimethyl (cyclo-hexyl-amido)-thio-phosphate
Fahimeh Sabbaghi1, Mehrdad Pourayoubi, Marek Nečas
1Department of Chemistry, Zanjan Branch, Islamic Azad University, Zanjan, Iran.
Acta Crystallographica. Section E, Structure Reports Online
|November 6, 2012
Summary
This study details the crystal structure of a novel organophosphorus compound, C(8)H(18)NO(2)PS. Key findings include a distorted tetrahedral phosphorus environment and a disordered cyclohexane ring with specific hydrogen bonding interactions.
Area of Science:
- Crystallography
- Organophosphorus Chemistry
- Structural Chemistry
Background:
- Organophosphorus compounds exhibit diverse chemical properties and applications.
- Understanding molecular structure is crucial for predicting chemical behavior and designing new materials.
- Crystallographic analysis provides precise atomic-level structural information.
Purpose of the Study:
- To elucidate the detailed crystal structure of the title compound, C(8)H(18)NO(2)PS.
- To characterize the bonding environment around the phosphorus atom.
- To investigate the conformational preferences and intermolecular interactions within the crystal lattice.
Main Methods:
- Single-crystal X-ray diffraction was employed to determine the three-dimensional molecular structure.
- Crystallographic data were collected and refined to high precision.
- Structural parameters including bond lengths, bond angles, and atomic coordinates were analyzed.
Main Results:
- The phosphorus atom is situated in a distorted tetrahedral (PSO(2)N) coordination environment.
- The cyclohexane ring displays positional disorder, existing as two equally populated sets of sites.
- Both disordered components of the cyclohexane ring adopt a chair conformation with an equatorial N-H group.
- Inversion dimers formed by P=S⋯H-N hydrogen bonds were identified in the crystal packing.
Conclusions:
- The study provides a comprehensive structural characterization of C(8)H(18)NO(2)PS.
- The observed structural features, including disorder and hydrogen bonding, offer insights into the compound's solid-state properties.
- This detailed structural data serves as a foundation for further investigations into the reactivity and potential applications of this organophosphorus compound.
Related Concept Videos
Preparation and Reactions of Sulfides
Sulfides are the sulfur analog of ethers, just as thiols are the sulfur analog of alcohol. Like ethers, sulfides also consist of two hydrocarbon groups bonded to the central sulfur atom. Depending upon the type of groups present, sulfides can be symmetrical or asymmetrical. Symmetrical sulfides can be prepared via an SN2 reaction between 2 equivalents of an alkyl halide and one equivalent of sodium sulfide.
Preparation and Reactions of Thiols
Thiols are prepared using the hydrosulfide anion as a nucleophile in a nucleophilic substitution reaction with alkyl halides. For instance, bromobutane reacts with sodium hydrosulfide to give butanethiol.

