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Updated: May 17, 2026

Yeast As a Chassis for Developing Functional Assays to Study Human P53
Published on: August 4, 2019
Annexin A2 and PSF proteins interact with p53 IRES and regulate translation of p53 mRNA
Arandkar Sharathchandra1, Ridhima Lal, Debjit Khan
1Department of Microbiology and Cell Biology; Indian Institute of Science; Bangalore, India.
Abstract:
p53 mRNA has been shown to be translated into two isoforms, full-length p53 (FL-p53) and a truncated isoform ΔN-p53, which modulates the functions of FL-p53 and also has independent functions. Previously, we have shown that translation of p53 and ΔN-p53 can be initiated at Internal Ribosome Entry Sites (IRES). These two IRESs were shown to regulate the translation of p53 and ΔN-p53 in a distinct cell-cycle phase-dependent manner. Earlier observations from our laboratory also suggest that the structural integrity of the p53 RNA is critical for IRES function and is compromised by mutations that affect the structure as well as RNA protein interactions. In the current study, using RNA affinity approach we have identified Annexin A2 and PTB associated Splicing Factor (PSF/SFPQ) as novel ITAFs for p53 IRESs. We have showed that the purified Annexin A2 and PSF proteins specifically bind to p53 IRES elements. Interestingly, in the presence of calcium ions Annexin A2 showed increased binding with p53 IRES. Immunopulldown experiments suggest that these two proteins associate with p53 mRNA ex vivo as well. Partial knockdown of Annexin A2 and PSF showed decrease in p53 IRES activity and reduced levels of both the p53 isoforms. More importantly the interplay between Annexin A2, PSF and PTB proteins for binding to p53mRNA appears to play a crucial role in IRES function. Taken together, our observations suggest pivotal role of two new trans-acting factors in regulating the p53-IRES function, which in turn influences the synthesis of p53 isoforms.
Insights
Researchers identified Annexin A2 and PSF/SFPQ as new protein factors that regulate p53 mRNA translation via Internal Ribosome Entry Sites (IRES). These factors influence the production of both full-length p53 (FL-p53) and its truncated isoform, ΔN-p53.
Area of Science:
- Molecular Biology
- RNA Biology
- Cancer Research
Background:
- p53 mRNA produces two isoforms: full-length p53 (FL-p53) and a truncated form, ΔN-p53.
- Internal Ribosome Entry Site (IRES) elements regulate the translation of both p53 isoforms in a cell-cycle-dependent manner.
- p53 IRES function is sensitive to RNA structure and RNA-protein interactions.
Purpose of the Study:
- Identify novel RNA-binding proteins that act as IRES trans-acting factors (ITAFs) for p53 IRES elements.
- Investigate the role of Annexin A2 and PTB associated Splicing Factor (PSF/SFPQ) in regulating p53 isoform synthesis.
Main Methods:
- RNA affinity assays to identify proteins binding to p53 IRES.
- In vitro binding assays with purified Annexin A2 and PSF proteins.
- Immunoprecipitation and knockdown experiments in cells.
- Analysis of p53 isoform levels.
Main Results:
- Annexin A2 and PSF/SFPQ were identified as novel ITAFs that specifically bind to p53 IRES elements.
- Annexin A2 binding to p53 IRES is enhanced by calcium ions.
- Knockdown of Annexin A2 or PSF/SFPQ reduced p53 IRES activity and the levels of both p53 isoforms.
- The interaction between Annexin A2, PSF/SFPQ, and PTB is crucial for p53 IRES function.
Conclusions:
- Annexin A2 and PSF/SFPQ are key regulators of p53 mRNA translation through IRES-mediated mechanisms.
- These ITAFs influence the synthesis of both FL-p53 and ΔN-p53 isoforms.
- The interplay of these ITAFs is critical for controlling p53 isoform production and function.
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