Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Agent-based modeling of erosion and sloughing during growth of Pseudomonas aeruginosa biofilms.

NPJ biofilms and microbiomes·2026
Same author

Opening the black box of neural variability: From noise to mechanisms.

Neuroscience and biobehavioral reviews·2026
Same author

Unstable slow oscillations couple with epileptogenic fast-rhythm bistability in sleep-related epilepsy: A stereoelectroencephalographic study.

Epilepsia·2026
Same author

A lineage-based model of scalable positional information in vertebrate brain development.

Neuron·2026
Same author

High density EEG and deep learning outcome prediction on the first day of coma after cardiac arrest.

NeuroImage·2025
Same author

Skin in the game: a review of computational models of the skin.

BioData mining·2025

Related Experiment Video

Updated: May 17, 2026

Statistical Modelling of Cortical Connectivity Using Non-invasive Electroencephalograms
08:51

Statistical Modelling of Cortical Connectivity Using Non-invasive Electroencephalograms

Published on: November 1, 2019

Developmental origin of patchy axonal connectivity in the neocortex: a computational model.

Roman Bauer1, Frederic Zubler, Andreas Hauri

  • 1Institute of Neuroinformatics, University of Zürich and Swiss Federal Institute of Technology Zürich.

Cerebral Cortex (New York, N.Y. : 1991)
|November 8, 2012
PubMed
Summary

A mathematical model explains how developing neocortical neurons form patchy axonal projections. This reaction-diffusion system creates hexagonal patterns, guiding axon growth and explaining observed connectivity motifs in the mammalian brain.

Keywords:
neural developmentreaction–diffusion modelsself-organizationsimulationsuperficial patch system

More Related Videos

In Situ Visualization of Axon Growth and Growth Cone Dynamics in Acute Ex Vivo Embryonic Brain Slice Cultures
10:45

In Situ Visualization of Axon Growth and Growth Cone Dynamics in Acute Ex Vivo Embryonic Brain Slice Cultures

Published on: October 14, 2021

Ex utero Electroporation and Whole Hemisphere Explants: A Simple Experimental Method for Studies of Early Cortical Development
13:47

Ex utero Electroporation and Whole Hemisphere Explants: A Simple Experimental Method for Studies of Early Cortical Development

Published on: April 3, 2013

Related Experiment Videos

Last Updated: May 17, 2026

Statistical Modelling of Cortical Connectivity Using Non-invasive Electroencephalograms
08:51

Statistical Modelling of Cortical Connectivity Using Non-invasive Electroencephalograms

Published on: November 1, 2019

In Situ Visualization of Axon Growth and Growth Cone Dynamics in Acute Ex Vivo Embryonic Brain Slice Cultures
10:45

In Situ Visualization of Axon Growth and Growth Cone Dynamics in Acute Ex Vivo Embryonic Brain Slice Cultures

Published on: October 14, 2021

Ex utero Electroporation and Whole Hemisphere Explants: A Simple Experimental Method for Studies of Early Cortical Development
13:47

Ex utero Electroporation and Whole Hemisphere Explants: A Simple Experimental Method for Studies of Early Cortical Development

Published on: April 3, 2013

Area of Science:

  • Neuroscience
  • Developmental Biology
  • Computational Biology

Background:

  • Mammalian neocortical connectivity exhibits a common patchy motif of clustered axonal projections.
  • Understanding the developmental mechanisms underlying this patchy connectivity is crucial for comprehending brain organization.

Purpose of the Study:

  • To investigate how patchy connectivity in layer II/III of the neocortex arises during neuronal development.
  • To model the formation of clustered axonal projections using a reaction-diffusion system.

Main Methods:

  • A mathematical model simulating neuronal development was employed.
  • The Gierer-Meinhardt reaction-diffusion system was implemented, with neurons expressing activator-inhibitor components.
  • Axonal growth cone guidance by morphogens secreted by intrapatch neurons was simulated.

Main Results:

  • The reaction-diffusion system generated an approximately hexagonal steady-state pattern across the neuronal population.
  • Simulated growth cones used morphogens as guidance cues, leading to patchy axonal arborization.
  • A single parameter adjustment revealed a linear relationship between patch diameter and interpatch spacing, matching experimental observations.

Conclusions:

  • A simple Gierer-Meinhardt system expressed by developing neocortical neurons is sufficient to explain observed patterns of clustered connectivity.
  • This model provides a mechanistic explanation for the formation of patchy axonal projections in the neocortex.