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Updated: May 16, 2026

High Throughput In Vitro Assessment of Latency Reversing Agents on HIV Transcription and Splicing
Published on: January 22, 2019
Cyclin T1 and CDK9 T-loop phosphorylation are downregulated during establishment of HIV-1 latency in primary resting
Sona Budhiraja1, Marylinda Famiglietti, Alberto Bosque
1Department of Molecular Microbiology and Virology, Baylor College of Medicine, Houston, TX, USA.
Insights
In resting CD4(+) T cells, low levels of Cyclin T1 and phosphorylated CDK9 limit HIV-1 transcription. Cellular activation increases these factors, impacting viral latency in memory CD4(+) T cells.
Area of Science:
- Molecular Biology
- Virology
- Immunology
Background:
- P-TEFb (Cyclin T1/CDK9) is crucial for HIV-1 transcription, with activity dependent on CDK9 phosphorylation.
- Resting CD4(+) T cells harbor latent HIV-1, and P-TEFb regulation in these cells, particularly memory subsets, is poorly understood.
Purpose of the Study:
- To investigate the regulation of P-TEFb expression and activity in resting memory CD4(+) T cells.
- To determine the mechanisms controlling P-TEFb availability and its role in HIV-1 latency.
Main Methods:
- Utilized an in vitro primary cell model of HIV-1 latency.
- Analyzed P-TEFb subunit expression and phosphorylation in naïve and memory CD4(+) T cells.
- Investigated the role of proteasomal degradation and microRNA in Cyclin T1 regulation.
- Assessed HEXIM1 levels and 7SK RNP complex formation.
Main Results:
- P-TEFb availability in resting memory CD4(+) T cells is governed by differential expression and phosphorylation of its subunits, not 7SK RNP sequestration.
- Resting CD4(+) T cells (naïve and memory) exhibit low Cyclin T1 and T-loop-phosphorylated CDK9, increasing upon activation.
- Cyclin T1 downregulation in memory cells involves proteasome-mediated proteolysis and miR-150.
- Low HEXIM1 levels in memory cells suggest 7SK RNP sequestration is not a primary driver of latency.
Conclusions:
- P-TEFb regulation in resting memory CD4(+) T cells relies on subunit expression and phosphorylation, distinct from mechanisms in dividing cells.
- Mechanisms like Cyclin T1 proteolysis and miR-150 contribute to low P-TEFb levels in memory cells, influencing HIV-1 latency.
- 7SK RNP complex sequestration is unlikely to be the main driver of HIV-1 latency in this cell type.
Abstract:
P-TEFb, a cellular kinase composed of Cyclin T1 and CDK9, is essential for processive HIV-1 transcription. P-TEFb activity is dependent on phosphorylation of Thr186 in the CDK9 T loop. In resting CD4(+) T cells which are nonpermissive for HIV-1 replication, the levels of Cyclin T1 and T-loop-phosphorylated CDK9 are very low but increase significantly upon cellular activation. Little is known about how P-TEFb activity and expression are regulated in resting central memory CD4(+) T cells, one of the main reservoirs of latent HIV-1. We used an in vitro primary cell model of HIV-1 latency to show that P-TEFb availability in resting memory CD4(+) T cells is governed by the differential expression and phosphorylation of its subunits. This is in contrast to previous observations in dividing cells, where P-TEFb can be regulated by its sequestration in the 7SK RNP complex. We find that resting CD4(+) T cells, whether naïve or memory and independent of their infection status, have low levels of Cyclin T1 and T-loop-phosphorylated CDK9, which increase upon activation. We also show that the decrease in Cyclin T1 protein upon the acquisition of a memory phenotype is in part due to proteasome-mediated proteolysis and likely also to posttranscriptional downregulation by miR-150. We also found that HEXIM1 levels are very low in ex vivo- and in vitro-generated resting memory CD4(+) T cells, thus limiting the sequestration of P-TEFb in the 7SK RNP complex, indicating that this mechanism is unlikely to be a driver of viral latency in this cell type.
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