Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Soil Microbial Ecology01:29

Soil Microbial Ecology

Soil microbial ecology is defined by highly diverse, spatially structured communities that drive nutrient cycling, organic matter turnover, and overall ecosystem stability. Although a gram of soil can contain thousands of bacterial and archaeal taxa, the ecological processes they mediate are even more crucial for sustaining terrestrial life.Microhabitats and NichesSoil is a heterogeneous mixture of minerals, organic matter, water, and air. Microbes inhabit distinct microhabitats formed by...
Microbe-Plant Interactions01:09

Microbe-Plant Interactions

Microbe-plant interactions represent a dynamic spectrum of associations shaped by intricate chemical signaling. These interactions can be neutral, beneficial, or detrimental, and profoundly influence plant physiology, growth, and ecosystem function. The plant microbiome, comprising bacteria, fungi, archaea, protists, and viruses, plays a pivotal role in mediating these effects through surface colonization, internal colonization, or systemic symbiosis.Mutualistic associations, particularly with...
The Roles of Bacteria and Fungi in Plant Nutrition02:11

The Roles of Bacteria and Fungi in Plant Nutrition

Plants have the impressive ability to create their own food through photosynthesis. However, plants often require assistance from organisms in the soil to acquire the nutrients they need to function correctly. Both bacteria and fungi have evolved symbiotic relationships with plants that help the species to thrive in a wide variety of environments.
Introduction to Microbial Ecology01:28

Introduction to Microbial Ecology

Microbial ecology examines the complex web of interactions and diversity among microorganisms within various ecosystems. This field seeks to understand how microbial populations adapt to and influence their environments and how these interactions shape broader ecological processes. Microbes are integral to ecosystem function, participating in nutrient cycling, energy flow, and the maintenance of environmental homeostasis.An ecosystem represents a dynamic interaction between living organisms...
Microenvironments01:22

Microenvironments

Microorganisms inhabit highly localized spaces known as microenvironments, which are defined by distinct physical and chemical characteristics. These include oxygen concentration, pH, temperature, light availability, and nutrient levels. The conditions within a microenvironment can differ markedly from those in the surrounding area and significantly influence microbial growth, metabolism, and community structure.Microenvironments often display sharp physicochemical gradients over small spatial...
Deep Sea Microbial Ecology01:18

Deep Sea Microbial Ecology

The deep ocean and its underlying sediments represent vast, largely unexplored microbial habitats that extend far beyond the sunlit photic zone. The photic (euphotic) zone typically spans the upper ~100–200 meters of pelagic waters in the open ocean, but its depth varies geographically and seasonally, where sufficient light supports photosynthetic life. Below this lies the deep sea, spanning roughly 1000–6000 meters (bathypelagic to abyssal zones), with deeper hadal trenches extending beyond...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

ProbeST: a custom probe design pipeline for dual host-pathogen Spatial Transcriptomics.

BMC genomics·2026
Same author

eMZed 3: flexible and interactive development of scalable LC-MS/MS data analysis workflows in python.

Bioinformatics advances·2026
Same author

From "synthetic" to defined microbial communities for clearer terminology.

Nature communications·2026
Same author

Metabolic feedbacks drive population dynamics and can lead to oscillations among leaf bacteria.

Nature communications·2026
Same author

Identification of overoxidizing and non-overoxidizing NAD-dependent methanol dehydrogenases and implications for synthetic methylotrophy.

Nature communications·2025
Same author

Induced endosymbiosis between a fungus and bacterium reveals a shift from antagonism to commensalism.

Nature communications·2025
Same journal

Reframing risk assessment for malaria elimination in a changing climate.

Nature reviews. Microbiology·2026
Same journal

Bacterial vesicles protect the membrane during polymyxin stress.

Nature reviews. Microbiology·2026
Same journal

Fermented food microbiome: influence on oral and gut microbiota, and human health.

Nature reviews. Microbiology·2026
Same journal

Klebsiella genus as driver of human disease: from infections to non-communicable disorders.

Nature reviews. Microbiology·2026
Same journal

Coupling experiments and macroecological models to resolve multi-stressor effects in vector-pathogen systems.

Nature reviews. Microbiology·2026
Same journal

A new antibiotic scaffold hits a new target.

Nature reviews. Microbiology·2026
See all related articles

Related Experiment Video

Updated: May 16, 2026

A Gnotobiotic System for Studying Microbiome Assembly in the Phyllosphere and in Vegetable Fermentation
07:51

A Gnotobiotic System for Studying Microbiome Assembly in the Phyllosphere and in Vegetable Fermentation

Published on: June 3, 2020

Microbial life in the phyllosphere.

Julia A Vorholt1

  • 1Institute of Microbiology, ETH Zurich (Swiss Federal Institute of Technology Zurich), Wolfgang-Pauli-Strasse 10, HCI F429, 8093 Zurich, Switzerland. vorholt@micro.biol.ethz.ch

Nature Reviews. Microbiology
|November 17, 2012
PubMed
Summary
This summary is machine-generated.

Microbiology of the phyllosphere (plant aerial parts) is now better understood. Cultivation-independent studies reveal dominant bacterial phyla and plant-driven community shaping, aiding plant growth and protection.

More Related Videos

A Workflow for the Quantitative Assessment of the Endophytic and Epiphytic Bacterial Microbiomes of the Bark of Populus trichocarpa
12:05

A Workflow for the Quantitative Assessment of the Endophytic and Epiphytic Bacterial Microbiomes of the Bark of Populus trichocarpa

Published on: June 27, 2025

A Lipid Extraction and Analysis Method for Characterizing Soil Microbes in Experiments with Many Samples
17:39

A Lipid Extraction and Analysis Method for Characterizing Soil Microbes in Experiments with Many Samples

Published on: July 16, 2017

Related Experiment Videos

Last Updated: May 16, 2026

A Gnotobiotic System for Studying Microbiome Assembly in the Phyllosphere and in Vegetable Fermentation
07:51

A Gnotobiotic System for Studying Microbiome Assembly in the Phyllosphere and in Vegetable Fermentation

Published on: June 3, 2020

A Workflow for the Quantitative Assessment of the Endophytic and Epiphytic Bacterial Microbiomes of the Bark of Populus trichocarpa
12:05

A Workflow for the Quantitative Assessment of the Endophytic and Epiphytic Bacterial Microbiomes of the Bark of Populus trichocarpa

Published on: June 27, 2025

A Lipid Extraction and Analysis Method for Characterizing Soil Microbes in Experiments with Many Samples
17:39

A Lipid Extraction and Analysis Method for Characterizing Soil Microbes in Experiments with Many Samples

Published on: July 16, 2017

Area of Science:

  • Plant microbiology
  • Microbial ecology
  • Plant-microbe interactions

Background:

  • Knowledge of phyllosphere (plant aerial parts) microbiology historically lags behind rhizosphere (root zone) microbiology.
  • Fundamental questions about phyllosphere microbial presence and function remain largely unanswered.
  • Recent advances are beginning to bridge this knowledge gap.

Purpose of the Study:

  • To summarize recent findings on phyllosphere microbial communities.
  • To highlight the role of cultivation-independent studies in advancing phyllosphere research.
  • To underscore the importance of understanding phyllosphere structural principles for plant health.

Main Methods:

  • Cultivation-independent molecular techniques (e.g., sequencing).
  • Analysis of microbial community composition in the phyllosphere.
  • Investigation of plant factors influencing microbial community structure.

Main Results:

  • A few bacterial phyla predominate across diverse plant phyllospheres.
  • Plant-specific factors significantly shape phyllosphere microbial communities.
  • Phyllosphere microbes exhibit specific adaptations and complex interactions with plants and each other.

Conclusions:

  • Phyllosphere microbial communities are structured and influenced by the host plant.
  • Understanding these communities is crucial for plant growth promotion and protection strategies.
  • Further research into structural principles will deepen our understanding of phyllosphere microbiota.