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The UCSC Genome Browser database: extensions and updates 2013
Laurence R Meyer1, Ann S Zweig, Angie S Hinrichs
1Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064, USA.
Nucleic Acids Research
|November 17, 2012
Summary
The University of California Santa Cruz (UCSC) Genome Browser provides public access to genomic data for 63 organisms. Recent updates include new genome assemblies and improved usability features for researchers.
Area of Science:
- Genomics
- Bioinformatics
- Computational Biology
Background:
- The UCSC Genome Browser is a vital online resource for accessing and analyzing genomic data.
- It hosts a comprehensive database of genomic sequences and annotations for numerous species.
Purpose of the Study:
- To provide an update on the UCSC Genome Browser's database and features.
- To highlight recent additions and improvements in genomic data accessibility and analysis.
Main Methods:
- The UCSC Genome Browser integrates genomic sequences and annotation tracks.
- Data is visualized, compared, analyzed, and shared through an online platform.
- New genome assemblies and annotation tracks are regularly added and updated.
Main Results:
- As of September 2012, data for 63 organisms is available, with ongoing expansion.
- 19 new genome assemblies were added in the past year, with more planned.
- Usability enhancements, including new navigation menus, have been implemented.
Conclusions:
- The UCSC Genome Browser continues to expand its genomic data resources.
- Regular updates and feature improvements enhance its utility for the scientific community.
- It remains a key tool for genomic research and data sharing.
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