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A Telemetric, Gravimetric Platform for Real-Time Physiological Phenotyping of Plant–Environment Interactions
Published on: August 5, 2020
TropGeneDB, the multi-tropical crop information system updated and extended
Chantal Hamelin1, Guilhem Sempere, Vincent Jouffe
1CIRAD, UMR AGAP, F-34398 Montpellier, France. chantal.hamelin@cirad.fr
Nucleic Acids Research
|November 20, 2012
Summary
TropGeneDB is a database for tropical crop genetic and phenotypic data. It provides access to molecular markers, genetic diversity, and resources for nine crop species.
Area of Science:
- Agricultural science
- Bioinformatics
- Genetics
Background:
- Tropical crop genetic and phenotypic data are crucial for breeding and research.
- Existing data repositories may lack comprehensive information or user-friendly access for diverse tropical crops.
- A centralized, accessible platform is needed to manage and share this valuable data.
Purpose of the Study:
- To establish TropGeneDB, a comprehensive database for tropical crop genetic, molecular, and phenotypic information.
- To organize and present data for nine key tropical crop species.
- To facilitate data retrieval and analysis for researchers and breeders.
Main Methods:
- Developing a structured database to store diverse data types including molecular markers, QTLs, maps, and diversity studies.
- Organizing data by crop species with dedicated public modules.
- Implementing crop-specific web interfaces for efficient data querying and consultation.
Main Results:
- TropGeneDB now houses extensive genetic and phenotypic data for tropical crops.
- Nine public modules are available: banana, cocoa, coconut, coffee, cotton, oil palm, rice, rubber tree, and sugarcane.
- User-friendly interfaces allow for both simple and complex data queries.
Conclusions:
- TropGeneDB serves as a valuable centralized resource for tropical crop genetic and phenotypic data.
- The platform enhances accessibility and utilization of critical information for crop improvement.
- TropGeneDB is an integral part of the South Green Bioinformatics Platform, supporting tropical agriculture research.
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