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Engineering Artificial Factors to Specifically Manipulate Alternative Splicing in Human Cells
Published on: April 26, 2017
Multiple novel alternative splicing forms of FBXW7α have a translational modulatory function and show specific
Yueyong Liu1, Shancheng Ren, Andres Castellanos-Martin
1Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Abstract:
FBXW7 acts as a tumor suppressor through ubiquitination and degradation of multiple oncoproteins. Loss of FBXW7 expression, which could be partially attributed by the genomic deletion or mutation of FBXW7 locus, is frequently observed in various human cancers. However, the mechanisms regulating FBXW7 expression still remain poorly understood. Here we examined the 5' region of FBXW7 gene to investigate the regulation of FBXW7 expression. We identified seven alternative splicing (AS) 5'-UTR forms of FBXW7α that are composed of multiple novel non-coding exons. A significant difference in translational efficiency among these 5'-UTRs variants was observed by in vivo Luciferase reporter assay and Western blot. Furthermore, we found that the mRNA level of the AS form with high translational efficiency was specifically reduced in more than 80% of breast cancer cell lines and in more than 50% of human primary cancers from various tissues. In addition, we also identified mutations of FBXW7 in prostate cancers (5.6%), kidney cancers (16.7%), and bladder cancers (18.8%). Our results suggest that in addition to mutation, differential expression of FBXW7α AS forms with different translational properties may serve as a novel mechanism for inactivation of FBXW7 in human cancer.
Insights
The F-box and WD repeat domain-containing 7 (FBXW7) tumor suppressor
Area of Science:
- Cancer Biology
- Molecular Oncology
- Gene Regulation
Background:
- FBXW7 is a crucial tumor suppressor that targets oncoproteins for degradation.
- Loss of FBXW7 expression via mutation or deletion is common in human cancers.
- Mechanisms controlling FBXW7 expression are not fully understood.
Purpose of the Study:
- To investigate novel regulatory mechanisms of FBXW7 expression.
- To analyze the 5' region of the FBXW7 gene for regulatory elements.
- To explore alternative splicing (AS) variants of FBXW7α and their translational efficiency.
Main Methods:
- Identification of alternative splicing 5'-UTR forms of FBXW7α.
- In vivo Luciferase reporter assay to assess translational efficiency.
- Western blot analysis and mRNA level quantification.
- Mutation analysis in prostate, kidney, and bladder cancers.
Main Results:
- Seven novel alternative splicing 5'-UTR forms of FBXW7α were identified.
- Significant differences in translational efficiency were observed among these variants.
- The highly translatable AS form of FBXW7α mRNA was downregulated in >80% of breast cancer cell lines and >50% of primary cancers.
- FBXW7 mutations were found in prostate (5.6%), kidney (16.7%), and bladder (18.8%) cancers.
Conclusions:
- Differential expression of FBXW7α AS forms with varying translational properties represents a novel mechanism for FBXW7 inactivation in cancer.
- This mechanism complements genetic mutations in contributing to FBXW7 loss in human malignancies.
- Understanding these regulatory pathways can inform future cancer therapies targeting FBXW7.
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