Related Experiment Video
Updated: May 16, 2026

09:14
Examination of Proteins Bound to Nascent DNA in Mammalian Cells Using BrdU-ChIP-Slot-Western Technique
Published on: January 14, 2016
STUbLs in chromatin and genome stability.
1Section of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA.
Biopolymers
|November 24, 2012
Summary
SUMO-targeted ubiquitin ligation (STUbL) enzymes modify chromatin, impacting gene regulation and genomic stability. Understanding these enzymes is crucial due to their links to disease and development.
Area of Science:
- Molecular Biology
- Biochemistry
- Genetics
Background:
- Chromatin structure and function depend on dynamic protein interactions.
- Ubiquitin and SUMO proteins are key post-translational modifications affecting chromatin.
- SUMO-targeted ubiquitin ligation (STUbL) is a specialized modification with significant nuclear roles.
Purpose of the Study:
- To focus on the features of STUbL-active enzymes.
- To examine their nuclear functions in humans, flies, and yeasts.
- To highlight the importance of STUbL activities in metazoans.
Main Methods:
- Review of existing literature on STUbL enzymes.
- Focus on well-studied enzymes and their nuclear functions.
- Comparative analysis across different species (humans, flies, yeasts).
Main Results:
- STUbL enzymes significantly affect nuclear functions, including gene regulation and genomic stability.
- Loss of STUbL activities is associated with disease and developmental defects in metazoans.
- Enzymes with STUbL activity are best studied in humans, flies, and yeasts.
Conclusions:
- STUbL enzymes play critical roles in fundamental nuclear processes.
- Further research into STUbL enzyme function, regulation, and substrates is essential.
- Understanding STUbL is vital for insights into disease and development.
Related Concept Videos
Duplication of Chromatin Structure
The process of chromosome duplication during cell division requires genome-wide disruption and re-assembly of chromatin. The chromatin structure must be accurately inherited, reassembled, and maintained in the daughter cells to ensure lineage propagation.
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
Inheritance of Chromatin Structures
Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying DNA...
Spreading of Chromatin Modifications
The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer is an enzyme that can...
Writers
The writer is an enzyme that can...
Histone Modification
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Histone Modification
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Nucleosome Remodeling
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...

