Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Diversity of Protists I01:15

Diversity of Protists I

Excavata is a diverse group of protists that includes both chemoorganotrophic and phototrophic species, with some thriving in anaerobic environments. Among the key groups within Excavata are diplomonads and parabasalids, which are flagellated protists that lack mitochondria and chloroplasts. These microorganisms typically inhabit anoxic environments, such as the intestines of animals, where they exist either symbiotically or as parasites, relying on fermentation for energy production. Some...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

The promise of AlphaFold for gene structure annotation.

Nucleic acids research·2026
Same author

Enhanced photocatalytic performance of K/O-co-doped crystalline carbon nitride for sulfamerazine degradation and CO<sub>2</sub> reduction.

Chemosphere·2026
Same author

Sr-enriched R-P type layered perovskite for biomass to syngas conversion with exceptional efficiency and selectivity via chemical looping scheme.

Bioresource technology·2026
Same author

Benchmarking large language models against human experts in rehabilitation medicine: a multidimensional evaluation.

Journal of neuroengineering and rehabilitation·2026
Same author

All-suture soft anchors versus metal anchors in arthroscopic rotator cuff repair: a multicenter randomized clinical trial.

International journal of surgery (London, England)·2026
Same author

Recognizing and mitigating the risk of aspiration in high-risk patients: A teachable moment on proactive airway protection.

The American journal of medicine·2026
Same journal

Correction to 'New origin firing is inhibited by APC/CCdh1 activation in S-phase after severe replication stress'.

Nucleic acids research·2026
Same journal

VeloRM: disentangling pre- and post-splicing RNA modification dynamics at single-cell resolution.

Nucleic acids research·2026
Same journal

Accessibility of telomeric overhangs to stabilizing small-molecule ligands.

Nucleic acids research·2026
Same journal

Multivalent interactions mediate SNAIL transcription factor stimulation of the nucleosome deacetylase activity of the CoREST complex.

Nucleic acids research·2026
Same journal

Genome-wide mapping of DNA G-quadruplexes in Trypanosoma brucei chromatin reveals enrichment in coding regions and transcription start sites.

Nucleic acids research·2026
Same journal

Correction to 'The Gene Ontology knowledgebase in 2026'.

Nucleic acids research·2026
See all related articles

Related Experiment Video

Updated: May 16, 2026

A Web Tool for Generating High Quality Machine-readable Biological Pathways
08:01

A Web Tool for Generating High Quality Machine-readable Biological Pathways

Published on: February 8, 2017

EuPathDB: the eukaryotic pathogen database.

Cristina Aurrecoechea1, Ana Barreto, John Brestelli

  • 1Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA.

Nucleic Acids Research
|November 24, 2012
PubMed
Summary
This summary is machine-generated.

EuPathDB offers expanded resources for eukaryotic pathogen genomics, incorporating new data types and analysis tools. These updates enhance the interrogation of genomic and functional genomic data for researchers.

More Related Videos

Development of Compendium for Esophageal Squamous Cell Carcinoma
03:36

Development of Compendium for Esophageal Squamous Cell Carcinoma

Published on: April 12, 2024

Related Experiment Videos

Last Updated: May 16, 2026

A Web Tool for Generating High Quality Machine-readable Biological Pathways
08:01

A Web Tool for Generating High Quality Machine-readable Biological Pathways

Published on: February 8, 2017

Development of Compendium for Esophageal Squamous Cell Carcinoma
03:36

Development of Compendium for Esophageal Squamous Cell Carcinoma

Published on: April 12, 2024

Area of Science:

  • Bioinformatics
  • Genomics
  • Computational Biology

Background:

  • EuPathDB provides integrated genomic and functional genomic data for eukaryotic pathogens.
  • Previous updates were reported in NAR in 2010.

Purpose of the Study:

  • To describe recent advances and updates to the EuPathDB resources.
  • To highlight new data types, analysis tools, and database infrastructure.

Main Methods:

  • Implementation of a new data loading workflow.
  • Development of a new database for Piroplasmida (Babesia and Theileria).
  • Integration of diverse new data types and analysis functionalities.

Main Results:

  • Addition of genome sequences, RNA-seq, phosphoproteomic, and SNP data.
  • Introduction of tools for motif searching, gene colocation analysis, and graphical data visualization.
  • Enhanced data interrogation capabilities through sophisticated search strategies.

Conclusions:

  • EuPathDB has significantly expanded its data offerings and analytical capabilities.
  • The updated resources provide a more comprehensive platform for eukaryotic pathogen research.
  • These advancements facilitate complex interrogations of genomic and functional data.