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Published on: September 10, 2014
Bioclipse-R: integrating management and visualization of life science data with statistical analysis
Ola Spjuth1, Valentin Georgiev, Lars Carlsson
1Department of Pharmaceutical Biosciences, Uppsala University, SE-751 24 Uppsala, Sweden.
Summary:
Bioclipse, a graphical workbench for the life sciences, provides functionality for managing and visualizing life science data. We introduce Bioclipse-R, which integrates Bioclipse and the statistical programming language R. The synergy between Bioclipse and R is demonstrated by the construction of a decision support system for anticancer drug screening and mutagenicity prediction, which shows how Bioclipse-R can be used to perform complex tasks from within a single software system.
Availability And Implementation:
Bioclipse-R is implemented as a set of Java plug-ins for Bioclipse based on the R-package rj. Source code and binary packages are available from https://github.com/bioclipse and http://www.bioclipse.net/bioclipse-r, respectively.
Contact:
martin.eklund@farmbio.uu.se
Supplementary Information:
Supplementary data are available at Bioinformatics online.
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