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Updated: May 16, 2026

Time-Resolved Fluorescence Anisotropy from Single Molecules for Characterizing Local Flexibility in Biomolecules
Published on: April 25, 2025
Spectrally resolved analysis of fluorescence blinking of single dye molecules in polymers at low temperatures
S V Orlov1, A V Naumov, Yu G Vainer
1Institute for Spectroscopy, Russian Academy of Sciences, Troitsk 142190, Moscow, Russia.
Abstract:
We present a method for the spectrally resolved analysis of fluorescence blinking of single quantum emitters. It is based on the well-known technique of repeated recording of single-molecule (SM) fluorescence excitation spectra. The potential of our approach is presented for the example of single tetra-tert-butylterrylene molecules in an amorphous polymer matrix (polyisobutylene), which exhibit fluorescence blinking at cryogenic temperatures. Measuring the spectral dependence of the blinking statistics improves the possibility to clarify the microscopic nature of the dark state(s) of the emitters. We demonstrate how the blinking statistics can be definitely attributed to conformational changes in the local environment of a SM and how the parameters of the corresponding elementary excitations can be measured. The analysis of the blinking statistics as a function of the optical excitation frequency allows us to discriminate between photo-induced and spontaneous transitions into a dark state.
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