Related Experiment Video
Updated: May 16, 2026

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Initiation of DNA damage responses through XPG-related nucleases
Karen Kuntz1, Matthew J O'Connell
1Department of Oncological Sciences, The Graduate School of Biological Sciences, Mount Sinai School of Medicine, New York, NY 10029, USA.
Abstract:
Lesion-specific enzymes repair different forms of DNA damage, yet all lesions elicit the same checkpoint response. The common intermediate required to mount a checkpoint response is thought to be single-stranded DNA (ssDNA), coated by replication protein A (RPA) and containing a primer-template junction. To identify factors important for initiating the checkpoint response, we screened for genes that, when overexpressed, could amplify a checkpoint signal to a weak allele of chk1 in fission yeast. We identified Ast1, a novel member of the XPG-related family of endo/exonucleases. Ast1 promotes checkpoint activation caused by the absence of the other XPG-related nucleases, Exo1 and Rad2, the homologue of Fen1. Each nuclease is recruited to DSBs, and promotes the formation of ssDNA for checkpoint activation and recombinational repair. For Rad2 and Exo1, this is independent of their S-phase role in Okazaki fragment processing. This XPG-related pathway is distinct from MRN-dependent responses, and each enzyme is critical for damage resistance in MRN mutants. Thus, multiple nucleases collaborate to initiate DNA damage responses, highlighting the importance of these responses to cellular fitness.
Insights
Researchers identified Ast1, a novel nuclease, that collaborates with other enzymes to initiate DNA damage checkpoints. This discovery highlights the importance of multiple nucleases in DNA repair and cellular fitness.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- DNA damage triggers a conserved checkpoint response, crucial for genomic stability.
- Single-stranded DNA (ssDNA) coated by replication protein A (RPA) is a key intermediate for checkpoint activation.
- Identifying factors that initiate this response is vital for understanding DNA repair pathways.
Purpose of the Study:
- To identify novel genes involved in initiating DNA damage checkpoint signaling.
- To characterize the role of the XPG-related endonuclease Ast1 in DNA damage response.
Main Methods:
- A genetic screen in fission yeast was performed to identify genes amplifying checkpoint signals.
- Overexpression of candidate genes was tested with a weak allele of chk1.
- The function of the identified gene, Ast1, was further investigated in relation to other nucleases like Exo1 and Rad2.
Main Results:
- Ast1, a novel XPG-related endonuclease, was identified as a factor promoting checkpoint activation.
- Ast1, Exo1, and Rad2 nucleases are recruited to double-strand breaks (DSBs) and promote ssDNA formation for checkpoint activation and repair.
- This XPG-related pathway is distinct from MRN-dependent responses, and these nucleases are critical in MRN mutants.
Conclusions:
- Multiple nucleases, including Ast1, Exo1, and Rad2, collaborate to initiate DNA damage responses.
- This collaborative nuclease activity is essential for DNA repair and cellular fitness, particularly under conditions of DNA damage.
- The findings reveal a distinct pathway for DNA damage response initiation involving XPG-related nucleases.
Related Concept Videos
Nucleotide Excision Repair
Cells are regularly exposed to mutagens—factors in the environment that can damage DNA and generate mutations. UV radiation is one of the most common mutagens and is estimated to introduce a significant number of changes in DNA. These include bends or kinks in the structure, which can block DNA replication or transcription. If these errors are not fixed, the damage can cause mutations, which in turn can result in cancer or disease depending on which sequences are...
Nucleotide Excision Repair
Nucleotide Excision Repair
Base Excision Repair
The first step of...
Base Excision Repair
The first step of...
Homologous Recombination

