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Updated: May 16, 2026

Purification of Ubiquitinated p53 Proteins from Mammalian Cells
Published on: March 21, 2022
Ubiquitylation of p53 by the APC/C inhibitor Trim39
Liguo Zhang1, Nai-Jia Huang, Chen Chen
1Department of Pharmacology and Cancer Biology, Duke University School of Medicine, Durham, NC 27710, USA.
Abstract:
Tripartite motif 39 (Trim39) is a RING domain-containing E3 ubiquitin ligase able to inhibit the anaphase-promoting complex (APC/C) directly. Through analysis of Trim39 function in p53-positive and p53-negative cells, we have found, surprisingly, that p53-positive cells lacking Trim39 could not traverse the G1/S transition. This effect did not result from disinhibition of the APC/C. Moreover, although Trim39 loss inhibited etoposide-induced apoptosis in p53-negative cells, apoptosis was enhanced by Trim39 knockdown in p53-positive cells. Furthermore, we show here that the Trim39 can directly bind and ubiquitylate p53 in vitro and in vivo, leading to p53 degradation. Depletion of Trim39 significantly increased p53 protein levels and cell growth retardation in multiple cell lines. We found that the relative importance of Trim39 and the well-characterized p53-directed E3 ligase, murine double minute 2 (MDM2), varied between cell types. In cells that were relatively insensitive to the MDM2 inhibitor, nutlin-3a, apoptosis could be markedly enhanced by siRNA directed against Trim39. As such, Trim39 may serve as a potential therapeutic target in tumors with WT p53 when MDM2 inhibition is insufficient to elevate p53 levels and apoptosis.
Insights
Tripartite motif 39 (Trim39) degrades the tumor suppressor p53, impacting cell cycle progression and apoptosis. Trim39 is a potential therapeutic target in cancers with wild-type p53 when MDM2 inhibition is ineffective.
Area of Science:
- Molecular Biology
- Cell Biology
- Oncology
Background:
- Tripartite motif 39 (Trim39) is an E3 ubiquitin ligase that can inhibit the anaphase-promoting complex (APC/C).
- The tumor suppressor protein p53 plays a critical role in cell cycle control and apoptosis.
- Murine double minute 2 (MDM2) is a well-characterized E3 ligase targeting p53 for degradation.
Purpose of the Study:
- To investigate the role of Trim39 in cell cycle regulation and apoptosis, particularly in relation to p53.
- To determine if Trim39 directly interacts with and degrades p53.
- To evaluate Trim39 as a potential therapeutic target in cancer.
Main Methods:
- Analysis of Trim39 function in p53-positive and p53-negative cell lines.
- Assessment of cell cycle progression and etoposide-induced apoptosis.
- In vitro and in vivo ubiquitylation and degradation assays for p53.
- Evaluation of Trim39 and MDM2 roles in different cell types.
- Assessment of apoptosis induction by Trim39 knockdown in cells treated with an MDM2 inhibitor (nutlin-3a).
Main Results:
- Trim39 depletion inhibited G1/S transition in p53-positive cells, independent of APC/C.
- Trim39 loss enhanced etoposide-induced apoptosis in p53-positive cells but inhibited it in p53-negative cells.
- Trim39 directly binds and ubiquitylates p53, leading to its degradation.
- Depletion of Trim39 increased p53 protein levels and caused cell growth retardation.
- Trim39 knockdown enhanced apoptosis in cells resistant to MDM2 inhibition.
Conclusions:
- Trim39 directly targets p53 for degradation, influencing cell cycle and apoptosis.
- The functional significance of Trim39 versus MDM2 in p53 regulation varies by cell type.
- Trim39 represents a potential therapeutic target for cancers with wild-type p53, especially when MDM2-targeted therapies are insufficient.
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