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Automated Segmentation of Cortical Grey Matter from T1-Weighted MRI Images
Published on: January 7, 2019
AUTOMATED SEGMENTATION OF CORTICAL NECROSIS USING A WAVELET BASED ABNORMALITY DETECTION SYSTEM.
Bilwaj Gaonkar1, Guray Erus, Kilian M Pohl
1Section for Biomedical Image Analysis, Department of Radiology, University of Pennsylvania.
Proceedings. IEEE International Symposium on Biomedical Imaging
|December 25, 2012
Summary
This study introduces an automated method for segmenting cortical necrosis in brain MRI scans. The approach accurately identifies these lesions in cerebrovascular disease patients, matching human expert performance.
Area of Science:
- Medical Imaging
- Neuroscience
- Radiology
Background:
- Cortical necrosis, dead brain tissue in the cortex, is a consequence of cerebrovascular disease (CVD).
- Accurate segmentation of cortical necrosis is challenging due to similar intensity patterns with cerebrospinal fluid (CSF).
Purpose of the Study:
- To develop and validate an automated method for segmenting cortical necrosis from brain FLAIR-MR images.
- To improve the detection and segmentation of brain lesions in patients with cerebrovascular disease.
Main Methods:
- A model of normal cortical variation was generated using Jacobian-based registration of healthy control MR scans.
- Deviations from the normal variation model in patient scans were identified as abnormalities.
- Abnormalities in the cortex with CSF-like intensity profiles were segmented as cortical necrosis.
Main Results:
- The automated method successfully detected and segmented cortical necrosis in 37 CVD patients.
- The method's performance was evaluated using a model derived from 72 healthy subjects.
- Segmentation overlap with human experts was comparable to inter-expert agreement.
Conclusions:
- The proposed automated method provides accurate segmentation of cortical necrosis in brain MRI.
- This technique shows potential for aiding in the diagnosis and monitoring of cerebrovascular disease.

