Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Cell Signaling in Plants01:25

Cell Signaling in Plants

Plant cells communicate to coordinate their cycle of growth, flowering and fruiting, and activities in roots, shoots, and leaves in response to the changing environmental conditions. Plant signaling is distinct from animal signaling. Plants primarily utilize enzyme-linked receptors, whereas the largest class of cell-surface receptors in animals are G-protein coupled receptors (GPCRs). Unlike animals, receptor tyrosine kinases are rare in plants. Instead, plants have a diverse class of...
Defenses Against Pathogens and Herbivores02:26

Defenses Against Pathogens and Herbivores

Plants present a rich source of nutrients for many organisms, making it a target for herbivores and infectious agents. Plants, though lacking a proper immune system, have developed an array of constitutive and inducible defenses to fend off these attacks.
Short-distance Transport of Resources02:12

Short-distance Transport of Resources

Short-distance transport refers to transport that occurs over a distance of just 2-3 cells, crossing the plasma membrane in the process. Small uncharged molecules, such as oxygen, carbon dioxide, and water, can diffuse across the plasma membrane on their own. In contrast, ions and larger molecules require the assistance of transport proteins due to their charge or size. Transport across membranes also occurs within individual cells, playing a variety of essential roles for the plant as a whole.
Overview of Cell Signaling01:23

Overview of Cell Signaling

Despite the protective membrane that separates a cell from the environment, cells need the ability to detect and respond to environmental changes. Additionally, cells often need to communicate with one another. Unicellular and multicellular organisms use a variety of cell signaling mechanisms to communicate with the environment.
Cells respond to many types of information, often through receptor proteins positioned on the membrane. For example, skin cells respond to and transmit touch...
Plant Cell Wall02:43

Plant Cell Wall

The plant cell wall gives plant cells shape, support, and protection. As a cell matures, its cell wall specializes according to the cell type. For example, the parenchyma cells of leaves possess only a thin, primary cell wall.
Diversity in Cell Signaling Responses01:22

Diversity in Cell Signaling Responses

The physiological function of a cell and cellular communication are outcomes of a range of extrinsic signals, intracellular signaling pathways, and cellular responses. No two cell types express the same repertoire of signaling components. Receptors are highly selective for their cognate ligands, but once activated, they can alter multiple cellular processes such as DNA transcription, protein synthesis, and metabolic activity. 
Graded and Abrupt Responses
Some signaling systems generate...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

ERF transcription factor StPti5 is a regulator of endophyte community maintenance in potato.

The New phytologist·2026
Same author

When "biodegradable" is not benign: Microplastic-driven disruption of soil processes and plant-microbe interactions.

Journal of hazardous materials·2026
Same author

Targeted capture and cloning of Rps6 reveal redundancy in soybean resistance genes.

BMC plant biology·2026
Same author

Identification and Cultivation of Biotechnologically Relevant Microalgal and Cyanobacterial Species Isolated from Sečovlje Salt Pans, Slovenia.

Marine drugs·2026
Same author

Strengthening bioinformatics education: e-learning initiatives across ELIXIR Nodes and Communities.

F1000Research·2026
Same author

Protocols for Grapevine Transformation: Tissue Preparation, Protoplast Isolation, and Cultivation.

Methods in molecular biology (Clifton, N.J.)·2026
Same journal

Modeling and analysis of forward and inverse kinematics for a flexible Stewart platform.

PloS one·2026
Same journal

Barriers and facilitators to healthcare utilization amongst people living with sickle cell disease in the United States: A scoping review.

PloS one·2026
Same journal

Enhancing data completeness in time series: Imputation strategies for missing data using significant periodically correlated components.

PloS one·2026
Same journal

Key targets and mechanisms by which gut microbiota-derived metabolites regulate Alzheimer's disease through the immune - inflammatory pathway: Based on network pharmacology and molecular docking.

PloS one·2026
Same journal

Grid-tied Transformer-less Boost Switched Capacitor Topology (TLBSCT) for PV applications.

PloS one·2026
Same journal

The load-velocity profiles and exercise-specific velocity zones for seven commonly used weightlifting exercises.

PloS one·2026
See all related articles

Related Experiment Video

Updated: May 15, 2026

Bacterial Leaf Infiltration Assay for Fine Characterization of Plant Defense Responses using the Arabidopsis thaliana-Pseudomonas syringae Pathosystem
11:50

Bacterial Leaf Infiltration Assay for Fine Characterization of Plant Defense Responses using the Arabidopsis thaliana-Pseudomonas syringae Pathosystem

Published on: October 1, 2015

Signalling network construction for modelling plant defence response.

Dragana Miljkovic1, Tjaša Stare, Igor Mozetič

  • 1Department of Knowledge Technologies, Jožef Stefan Institute, Ljubljana, Slovenia. dragana.miljkovic@ijs.si

Plos One
|December 29, 2012
PubMed
Summary
This summary is machine-generated.

This study details a new method, Bio3graph, for automatically extracting plant defense signaling pathways from scientific literature. It enhances understanding of plant immunity by integrating new findings into existing models.

More Related Videos

Wide-Field, Real-Time Imaging of Local and Systemic Wound Signals in Arabidopsis
06:50

Wide-Field, Real-Time Imaging of Local and Systemic Wound Signals in Arabidopsis

Published on: June 4, 2021

A Hydroponic Co-cultivation System for Simultaneous and Systematic Analysis of Plant/Microbe Molecular Interactions and Signaling
11:16

A Hydroponic Co-cultivation System for Simultaneous and Systematic Analysis of Plant/Microbe Molecular Interactions and Signaling

Published on: July 22, 2017

Related Experiment Videos

Last Updated: May 15, 2026

Bacterial Leaf Infiltration Assay for Fine Characterization of Plant Defense Responses using the Arabidopsis thaliana-Pseudomonas syringae Pathosystem
11:50

Bacterial Leaf Infiltration Assay for Fine Characterization of Plant Defense Responses using the Arabidopsis thaliana-Pseudomonas syringae Pathosystem

Published on: October 1, 2015

Wide-Field, Real-Time Imaging of Local and Systemic Wound Signals in Arabidopsis
06:50

Wide-Field, Real-Time Imaging of Local and Systemic Wound Signals in Arabidopsis

Published on: June 4, 2021

A Hydroponic Co-cultivation System for Simultaneous and Systematic Analysis of Plant/Microbe Molecular Interactions and Signaling
11:16

A Hydroponic Co-cultivation System for Simultaneous and Systematic Analysis of Plant/Microbe Molecular Interactions and Signaling

Published on: July 22, 2017

Area of Science:

  • Plant biology
  • Molecular biology
  • Bioinformatics

Background:

  • Plant defense against pathogens involves complex signaling.
  • Key pathways include salicylic acid, jasmonic acid, and ethylene signaling.
  • Arabidopsis thaliana is a model organism for studying these pathways.

Purpose of the Study:

  • To construct and refine signaling network topology for plant defense responses.
  • To develop an automated approach for extracting biological relations from literature.
  • To integrate newly discovered reactions into existing pathway models.

Main Methods:

  • Manual construction of initial signaling network topology.
  • Development of Bio3graph for automated information extraction from literature.
  • Application of Bio3graph to 9,586 full-text articles.
  • Merging manually and automatically derived network data.

Main Results:

  • Initial network: 175 components, 387 reactions.
  • Bio3graph identified 137 new reactions.
  • Final network: 175 components, 524 reactions.
  • Bio3graph workflow is publicly available.

Conclusions:

  • The developed Bio3graph approach effectively identifies new biological relations.
  • The refined plant defense signaling network aids computational modeling and omics data interpretation.
  • Bio3graph can be adapted for modeling other biological systems.