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Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
MYCN is recruited to the RASSF1A promoter but is not critical for DNA hypermethylation in neuroblastoma
Jessica Charlet1, Marianna Szemes, Karim T A Malik
1School of Cellular and Molecular Medicine, University of Bristol, Bristol, UK.
Abstract:
Tumor suppressor genes such as RASSF1A are often epigenetically repressed by DNA hypermethylation in neuroblastoma, where the MYCN proto-oncogene is frequently amplified. MYC has been shown to associate with DNA methyltransferases, thereby inducing transcriptional repression of target genes, which suggested that MYCN might play a similar mechanistic role in the hypermethylation of tumor suppressor genes in neuroblastoma. This study tested that hypothesis by using co-immunoprecipitation and ChIP to investigate MYCN-DNA methyltransferase interactions, together with MYCN knock-down and over-expression systems to examine the effect of MYCN expression changes on gene methylation, employing both candidate gene and genome-wide assays. We show that MYCN interacts with DNA methyltransferases and is recruited to the promoter region of RASSF1A. However, using four model systems, we showed that long-term silencing of MYCN induces only a small loss of DNA methylation at the RASSF1A promoter in MYCN amplified neuroblastoma cell lines and over-expression of MYCN does not induce any DNA methylation, suggesting that MYCN is not critical for DNA hypermethylation in neuroblastoma.
Insights
MYCN interacts with DNA methyltransferases in neuroblastoma, but does not drive tumor suppressor gene hypermethylation. This finding suggests MYCN is not critical for epigenetic repression in neuroblastoma.
Area of Science:
- Neuro-oncology
- Epigenetics
- Molecular Biology
Background:
- Neuroblastoma frequently exhibits amplified MYCN and hypermethylation of tumor suppressor genes like RASSF1A.
- The MYC proto-oncogene's association with DNA methyltransferases suggests MYCN might induce hypermethylation in neuroblastoma.
Purpose of the Study:
- To investigate the mechanistic role of MYCN in the DNA hypermethylation of tumor suppressor genes in neuroblastoma.
- To determine if MYCN interacts with DNA methyltransferases and influences gene methylation patterns.
Main Methods:
- Co-immunoprecipitation and Chromatin Immunoprecipitation (ChIP) assays to detect MYCN-DNA methyltransferase interactions.
- MYCN knockdown and overexpression systems in neuroblastoma cell lines.
- Candidate gene and genome-wide methylation assays.
Main Results:
- MYCN was found to interact with DNA methyltransferases and be recruited to the RASSF1A promoter region.
- Long-term MYCN silencing resulted in minimal DNA methylation loss at the RASSF1A promoter in MYCN-amplified neuroblastoma cells.
- MYCN overexpression did not induce significant DNA methylation changes.
Conclusions:
- MYCN interacts with DNA methyltransferases but is not the critical driver of DNA hypermethylation in neuroblastoma.
- The epigenetic repression of tumor suppressor genes in neuroblastoma likely involves mechanisms independent of MYCN's direct role in DNA methylation induction.
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