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Updated: May 15, 2026

Yeast As a Chassis for Developing Functional Assays to Study Human P53
Published on: August 4, 2019
A synthetic interaction screen identifies factors selectively required for proliferation and TERT transcription in
Li Xie1, Claude Gazin, Sung Mi Park
1Howard Hughes Medical Institute, Programs in Gene Function and Expression and Molecular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts, USA.
Abstract:
Numerous genetic and epigenetic alterations render cancer cells selectively dependent on specific genes and regulatory pathways, and represent potential vulnerabilities that can be therapeutically exploited. Here we describe an RNA interference (RNAi)-based synthetic interaction screen to identify genes preferentially required for proliferation of p53-deficient (p53-) human cancer cells. We find that compared to p53-competent (p53+) human cancer cell lines, diverse p53- human cancer cell lines are preferentially sensitive to loss of the transcription factor ETV1 and the DNA damage kinase ATR. In p53- cells, RNAi-mediated knockdown of ETV1 or ATR results in decreased expression of the telomerase catalytic subunit TERT leading to growth arrest, which can be reversed by ectopic TERT expression. Chromatin immunoprecipitation analysis reveals that ETV1 binds to a region downstream of the TERT transcriptional start-site in p53- but not p53+ cells. We find that the role of ATR is to phosphorylate and thereby stabilize ETV1. Our collective results identify a regulatory pathway involving ETV1, ATR, and TERT that is preferentially important for proliferation of diverse p53- cancer cells.
Insights
Cancer cells lacking p53 show a dependency on ETV1 and ATR. Inhibiting these, or TERT, halts cancer growth, revealing a new therapeutic target for p53-deficient cancers.
Area of Science:
- Genetics
- Molecular Biology
- Cancer Research
Background:
- Cancer cells develop dependencies on specific genes and pathways due to genetic and epigenetic changes.
- These dependencies represent potential therapeutic vulnerabilities.
- The tumor suppressor protein p53 plays a critical role in preventing cancer development.
Purpose of the Study:
- To identify genes essential for the proliferation of p53-deficient (p53-) human cancer cells using an RNA interference (RNAi) screen.
- To uncover potential therapeutic targets specific to p53-deficient cancers.
Main Methods:
- Conducted an RNA interference (RNAi)-based synthetic interaction screen.
- Compared gene requirements between p53-deficient and p53-competent cancer cell lines.
- Utilized gene knockdown, gene expression analysis, and chromatin immunoprecipitation.
Main Results:
- p53-deficient cancer cells are preferentially sensitive to the loss of transcription factor ETV1 and DNA damage kinase ATR.
- Knockdown of ETV1 or ATR in p53-deficient cells reduces telomerase catalytic subunit (TERT) expression, causing growth arrest.
- ETV1 binds downstream of the TERT transcriptional start site in p53-deficient cells.
- ATR phosphorylates and stabilizes ETV1.
Conclusions:
- A regulatory pathway involving ETV1, ATR, and TERT is crucial for the proliferation of diverse p53-deficient cancer cells.
- This pathway represents a potential therapeutic vulnerability in p53-deficient cancers.
- Targeting ETV1, ATR, or TERT could offer a strategy for treating p53-deficient cancers.
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