Related Experiment Video
Updated: May 15, 2026

11:22
Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
Implications of the human microbiome project for epidemiology
Betsy Foxman1, Mariana Rosenthal
1Department of Epidemiology, School of Public Health, University of Michigan, Ann Arbor, MI 48109-2029, USA. bfoxman@umich.edu
American Journal of Epidemiology
|January 9, 2013
Summary
The human microbiota, microorganisms in and on us, offers insights into health variability and biomarkers. Epidemiologists can now integrate microbiota research into population health studies.
Area of Science:
- Microbiome research
- Epidemiology
- Population health
Background:
- The human microbiota comprises microorganisms residing in and on the body.
- Microbiota composition influences individual health outcomes and variability.
- It serves as a potential source for novel biomarkers and diagnostic indicators.
Purpose of the Study:
- To highlight the significance of the human microbiota as a resource for understanding health.
- To emphasize the potential of microbiota research in identifying biomarkers for environmental exposures and disease.
- To advocate for the integration of microbiota assessments into epidemiologic studies.
Main Methods:
- Leveraging low-cost, high-throughput techniques for microbiota assessments.
- Analyzing data from recent Human Microbiome Consortium publications and related studies.
- Applying epidemiological expertise to translate microbiome findings.
Main Results:
- Microbiota research presents a significant opportunity for advancing population health.
- High-throughput sequencing enables straightforward microbiota analysis in large studies.
- The field is rapidly expanding with increased interest and media attention.
Conclusions:
- The human microbiota is a valuable resource for explaining health variability.
- Epidemiologists are crucial for translating microbiome research into actionable public health insights.
- Integrating microbiota studies into epidemiology is timely and essential for population health advancements.
Related Concept Videos
Introduction to the Human Microbiota
Microorganisms colonize various regions of the human body, including the mouth, nasal passages, throat, stomach, intestines, urogenital tract, and skin. The total number of microbial cells is estimated to range from 10¹³ to 10¹⁴—comparable to, or exceeding, the number of human somatic cells. This host–microbiome relationship has led to the conceptualization of humans as supraorganisms, wherein microbial communities perform vital roles in development, immunity, and disease...
Human Virome
The human body harbors a vast and diverse viral community known as the human virome. The virome includes bacteriophages that infect bacteria, and eukaryotic viruses that infect human cells. Transient dietary and environmental viruses also contribute to this dynamic ecosystem. Estimates suggest the human body may contain on the order of 10¹³ viral particles, though abundance varies widely by body site and detection method.Comprehensive characterization of the virome has become possible only with...
Development of Human Microbiota
The human microbiota begins developing at birth and undergoes continual change as we age. Infancy marks a critical period of microbial sensitivity, offering a “window of opportunity” during which beneficial microbes help mature the immune system. By age three, children typically develop a more stable and diverse microbial community. Newborns acquire microbes from their immediate environment; vaginal delivery favors maternal vaginal microbes, while cesarean births favor microbes from the skin...
Introduction to Epidemiology
Epidemiology, known as the cornerstone of public health, involves studying the distribution and determinants of health-related events in defined populations and applying these insights to control health issues. This is essential for understanding how diseases spread, identifying populations at greater risk, and implementing measures to control or prevent outbreaks. Epidemiology addresses not only infectious diseases but also non-communicable conditions like cancer and cardiovascular disease,...
Functions of the Gut Microbiota
The gut microbiota includes trillions of microorganisms that colonize the human gastrointestinal tract, including bacteria, archaea, viruses, and fungi. This complex ecosystem plays a critical role in maintaining intestinal and systemic health. Most of these microbes inhabit the large intestine, establishing a relatively stable and diverse community that contributes to gut homeostasis through various metabolic, immunological, and protective mechanisms.Dominant bacterial phyla, such as...
The Oral Microbiota
The oral microbiome includes a complex ecosystem comprising over 700 microbial species, identified through genomic sequencing and culture-based analyses to date. This community includes a core microbiome, found universally among individuals, and a variable component influenced by environmental factors such as diet, lifestyle, and host genetics. Site-specific conditions, including oxygen gradients, pH levels, and nutrient availability, determine the spatial distribution of these microorganisms...

